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Commits on May 24, 2024

• add SWQC tag, add split write module

  yanlifeng

  committed
  824d14e

Commits on May 17, 2024

• opt data malloc

  yanlifeng

  committed
  d996ffe

Commits on May 16, 2024

• do se and pe fast memcpy

  yanlifeng

  committed
  ff7d8cd

Commits on May 7, 2024

• move CPE_in_gz to consumer

  yanlifeng

  committed
  7a9eafd

Commits on Apr 24, 2024

• fast state merge use CPEs, strore bloom filter on CPEs for orp module, fast pre_over_analysis use CPEs

  yanlifeng

  committed
  1384cf2

Commits on Apr 23, 2024

• remove swidx file dependency

  yanlifeng

  committed
  7f20ed1

Commits on Apr 22, 2024

• new sync methods, fix deadlock bug

  yanlifeng

  committed
  a9de58c

Commits on Apr 18, 2024

• add new in-mem module, including gz, but may deadlock because producer is too fast

  yanlifeng

  committed
  bc52f9b

Commits on Apr 17, 2024

• mpi comm pre 64 chunks, reduce mpi comm time

  yanlifeng

  committed
  480442f

Commits on Apr 15, 2024

• opt se dup and add pe dup

  yanlifeng

  committed
  3b63db0

Commits on Apr 14, 2024

• add fast gz multi-process support

  yanlifeng

  committed
  a5bfd56

Commits on Apr 10, 2024

• add libdeflate for fast gz files process

  yanlifeng

  committed
  8997b8b

Commits on Apr 8, 2024

• add orp module

  yanlifeng

  committed
  827b1d9

Commits on Mar 31, 2024

• fix chunk null bug

  yanlifeng

  committed
  c7a3870

Commits on Mar 4, 2024

• add pe mem IO, add pe slave_format

  yanlifeng

  committed
  f8460eb

Commits on Feb 28, 2024

• opt se format part, fix sync bug, add 2 release version, replace queue between producer and consumer

  yanlifeng

  committed
  eeb75a9

Commits on Feb 26, 2024

• add mem IO for se

  yanlifeng

  committed
  6aa4e9b

Commits on Feb 4, 2023

• read one file

  

  yanlifeng

  committed
  37d7e27

Commits on Feb 2, 2023

• PE version, read split files

  

  yanlifeng

  committed
  e48f3d8

Commits on Jan 31, 2023

• move mpi sync in consumer and adjust split file size(file0 bigger)

  

  yanlifeng

  committed
  8a54402

Commits on Jan 28, 2023

• read split files version, 56->34->24

  

  yanlifeng

  committed
  1f71885

Commits on Jan 26, 2023

• mpi merge state info

  

  yanlifeng

  committed
  db7e79f

Commits on Jan 24, 2023

• fix mpi version bug

  

  yanlifeng

  committed
  3f1e6e2

Commits on Jan 20, 2023

• mpi version, 4.6->2.8 (SE only)

  

  yanlifeng

  committed
  061a800

Commits on Jan 17, 2023

• add -C para, add more timer

  

  yanlifeng

  committed
  796d68f

Commits on Jan 8, 2023

• fix ofstram close

  

  yanlifeng

  committed
  c419569

Commits on Jan 7, 2023

• 9A, multi-thread, faster, but still slower than x86 version

  

  yanlifeng

  committed
  08b010f

Commits on Jan 5, 2023

• single thread, sw9A, se and pe (adapter auto detect may bug ?)

  

  yanlifeng

  committed
  cfb7782

Commits on Jan 1, 2023

• add insertsize and overlap, fix pe output bug

  

  yanlifeng

  committed
  20d74ab

Commits on Dec 28, 2022

• add se and pe(no insertsize, no overlap)

  

  yanlifeng

  committed
  72f7b3b

Commits on Dec 20, 2022

• sample ngs state, but slow than main core version

  

  yanlifeng

  committed
  cf22157

Commits on Dec 17, 2022

• no producer and consumer

  

  yanlifeng

  committed
  8e0475c

• sample slave, sometimes RE (mostly because of c++ threads)

  

  yanlifeng

  committed
  fd553c0

Commits on Dec 16, 2022

• tgs sample slave, somtimes RE ?

  

  yanlifeng

  committed
  7fbc877

Commits on Dec 9, 2022

• sw main core version

  

  ylf9811

  committed
  81f84d4

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