Skip to content

Range-Expansions/stepping_stone_expansions

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Stepping Stone Simulations

A package that I use to simulate the evolution of a spatially distributed population consisting of a line of connected demes. In each deme, we assume that there are N individuals with different growth rates, mutation rates, etc. See the documentation ipython notebook for examples of how to use the code.

Examples

Random initial fitnesses

Random initial fitnesses

Muller's "Mutational Meltdown"

Mutational Metldown

A single deme (well-mixed population) with different fitnesses

A single deme with different fitnesses

Mean fitness vs. time

License

Feel free to use and play with my code (unless you are using it for profit; contact me in this case).

This code is currently unpublished, so if you decide to publish academic work using it, contact me; I will have to be a co-author. I will publish a paper using this code soon; once it is published, you can use this code however you want as long as you cite the paper the code first appeared in.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages