A spaCy wrapper for GliNER

Generalist and Lightweight Model for Named Entity Recognition (Extract any entity types from texts) @ NAACL 2024

Fast, world class biomedical NER

Python module (C extension and plain python) implementing Aho-Corasick algorithm

A Python library to parse MediaWiki WikiText

Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion

Data labeling react app that is backend agnostic and can be embedded into your applications — distributed as an NPM package

Grounding of biomedical named entities with contextual disambiguation

Ontology Lookup Service from SPOT at EBI

Configuration to deploy ontotools using docker compose

A full spaCy pipeline and models for scientific/biomedical documents.

SNP Extraction Tool for Human Variations

Rapid fuzzy string matching in Python using various string metrics

[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.

PyTorch Implementation of BioBERT

Implementation of Nested Named Entity Recognition using BERT

Universal Adversarial Triggers for Attacking and Analyzing NLP (EMNLP 2019)

An Open-Source Package for Neural Relation Extraction (NRE)

An open-source NLP research library, built on PyTorch.

all kinds of text classification models and more with deep learning

Tensorflow Best Practices

The SDKMAN! Command Line Interface

Database - Elasticsearch realtime mapping. With NLP goodiness.

Checklist of the most important security countermeasures when designing, testing, and releasing your API

!!! OLD/OUTDATED, use https://github.com/GateNLP/gateplugin-StringAnnotation

Personal information de-identification tool

Lime: Explaining the predictions of any machine learning classifier

Pure bash script to test and wait on the availability of a TCP host and port

Summaries and notes on Deep Learning research papers