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Commits on Mar 15, 2013

• Get rid of %ld-with-int64_t warning on Mac

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Commits on Aug 2, 2012

• Use int64_t to prevent count overflow in view -c; on behalf of Joshua Randall: Set y2range in quals2.png plot

  pd3

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Commits on Mar 24, 2012

• filter on query sequence length (not aln len)

  lh3

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Commits on Mar 20, 2012

• optionally surpress /[12] in bam2fq

  lh3

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  17d5671

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• Merge branch 'master' into mt

  lh3

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• bugfix: downsampling not always working

  lh3

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Commits on Mar 18, 2012

• added mt comression to merge

  lh3

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• bugfix in caching

  lh3

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• multi-threading working on toy examples

  lh3

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Commits on Feb 8, 2012

• changes from git

  

  Heng Li

  committed
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Commits on Jul 15, 2011

• allow to set seed in view-subsampling

  

  Heng Li

  committed
  2c05c1d

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• subsampling read pairs

  

  Heng Li

  committed
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Commits on Jul 7, 2011

• Release samtools-0.1.17

  

  Heng Li

  committed
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Commits on Apr 8, 2011

• * added bam_verbose global variable

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  Heng Li

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Commits on Mar 30, 2011

• * added BED support to samtools view and mpileup and bcftools view

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  Heng Li

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Commits on Mar 18, 2011

• * allow to change the compression level in BAM output

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  Heng Li

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Commits on Nov 8, 2010

• Incorporate patches by Marcel Martin for read counting.

  

  Heng Li

  committed
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Commits on Oct 21, 2010

• Add the relevant filename or region to error messages, and cause a failure

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  lh3

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Commits on Sep 22, 2010

• When bam_read1() returns an error (return value <= -2), propagate that error

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Commits on Dec 1, 2009

• * samtools-0.1.7-4 (r522)

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  Heng Li

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Commits on Nov 6, 2009

• * samtools-0.1.6-21 (r508)

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  Heng Li

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Commits on Oct 26, 2009

• * samtools-0.1.6-19 (r494)

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  Heng Li

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Commits on Oct 24, 2009

• * BUGGY VERSION

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  Heng Li

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  039d3c2

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• * This revision is SERIOUSLY BUGGY. Please NOT use it.

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  Heng Li

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Commits on Aug 4, 2009

• * samtools-0.1.5-24 (r435)

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  Heng Li

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Commits on Jul 31, 2009

• * samtools-0.1.5-19 (r426)

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  Heng Li

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Commits on Jul 30, 2009

• * samtools-0.1.5-17 (r422)

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  Heng Li

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• * samtools-0.1.5-16 (r421)

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Commits on Jul 24, 2009

• * samtools-0.1.5-14 (r417)

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  Heng Li

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• * samtools-0.1.5-17 (r416)

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  Heng Li

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• * samtools-0.1.5-12 (r415)

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  Heng Li

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Commits on Jun 13, 2009

• * samtools-0.1.4-12 (r347)

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  Heng Li

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• * samtools-0.1.4-11 (r346)

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  Heng Li

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• * samtools-0.1.4-9 (r340)

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  Heng Li

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Commits on Jun 12, 2009

• * samtools-0.1.4-8 (r338)

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  Heng Li

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