RuixLi
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tif-matlab Public
A wrapper packge to read and write multi-page tif or tiff files with MATLAB.
MATLAB MIT License UpdatedJan 9, 2025 -
sciColorMap Public
MATLAB colormaps for scientific data representation
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dsMap Public
MATLAB functions to analysis direction and orientation selectivity
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NoRMCorre Public
Forked from flatironinstitute/NoRMCorreMatlab routines for online non-rigid motion correction of calcium imaging data
MATLAB GNU General Public License v2.0 UpdatedMar 19, 2024 -
DeepCAD-RT Public
Forked from cabooster/DeepCAD-RTDeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 19, 2024 -
yaml-matlab Public
Forked from MartinKoch123/yamlMATLAB YAML parser and emitter based on SnakeYAML
MATLAB MIT License UpdatedMar 19, 2024 -
matlab-schemer Public
Forked from scottclowe/matlab-schemerApply and save color schemes in MATLAB with ease.
MATLAB BSD 2-Clause "Simplified" License UpdatedMar 19, 2024 -
npy-matlab Public
Forked from kwikteam/npy-matlabExperimental code to read/write NumPy .NPY files in MATLAB
Jupyter Notebook BSD 2-Clause "Simplified" License UpdatedMar 19, 2024 -
faceMov Public
extract animal movement using svd decomposition
MATLAB MIT License UpdatedMar 19, 2024 -
autoRM Public
an automatic toolkit for mouse retinotopic mapping
Python MIT License UpdatedMar 19, 2024 -
suite2p Public
Forked from MouseLand/suite2pcell detection in calcium imaging recordings
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 16, 2024 -
CaImAn Public
Forked from flatironinstitute/CaImAnComputational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Python GNU General Public License v2.0 UpdatedMar 15, 2024 -
wfield Public
Forked from jcouto/wfieldTools to process widefield data
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 15, 2024 -
allenCCF Public
Forked from cortex-lab/allenCCFTools to work with Allen Inst CCF data in matlab
MATLAB UpdatedMar 7, 2024 -
export_fig Public
Forked from altmany/export_figA MATLAB toolbox for exporting publication quality figures
MATLAB BSD 3-Clause "New" or "Revised" License UpdatedFeb 21, 2024 -
rastermap Public
Forked from MouseLand/rastermapa visualization method for neural data
Python GNU General Public License v3.0 UpdatedFeb 21, 2024 -
facemap Public
Forked from MouseLand/facemapFramework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
Python GNU General Public License v3.0 UpdatedFeb 12, 2024 -
Pytorch-UNet Public
Forked from milesial/Pytorch-UNetPyTorch implementation of the U-Net for image semantic segmentation with high quality images
Python GNU General Public License v3.0 UpdatedFeb 11, 2024 -
BrainSpace Public
Forked from MICA-MNI/BrainSpaceBrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 29, 2024 -
affinewarp Public
Forked from ahwillia/affinewarpAn implementation of piecewise linear time warping for multi-dimensional time series alignment
Python UpdatedOct 28, 2023 -
suite2p-matlab Public
Forked from cortex-lab/Suite2PTools for processing 2P recordings
MATLAB Other UpdatedOct 9, 2023 -
CaImAn-MATLAB Public
Forked from flatironinstitute/CaImAn-MATLABComplete Matlab pipeline for large scale calcium imaging data analysis
MATLAB GNU General Public License v2.0 UpdatedJul 4, 2023 -
DeepAction Public
Forked from carlwharris/DeepActionToolbox for classification of animal behavior in video
MATLAB MIT License UpdatedFeb 19, 2023 -
Mouse_WOI Public
Forked from brierl/Mouse_WOIMouse wide-field optical imaging processing toolbox
MATLAB UpdatedJan 13, 2023 -
retinotopic_mapping Public
Forked from zhuangjun1981/retinotopic_mappingvisual display and analysis python code for retinotopic mapping of rodent visual cortex
Jupyter Notebook GNU General Public License v3.0 UpdatedOct 12, 2021 -
matlab_elastix Public
Forked from raacampbell/matlab_elastixMATLAB Elastix wrapper
MATLAB GNU Lesser General Public License v3.0 UpdatedAug 17, 2021 -
WidefieldImager Public
Forked from churchlandlab/WidefieldImagerPre-processing pipeline for widefield data
MATLAB UpdatedDec 11, 2020 -
Starburst Public
Forked from thirtysixthspan/StarburstOpen source eye tracking algorithm
MATLAB GNU General Public License v2.0 UpdatedSep 6, 2011