103-tools_and_resources.md

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SARS-CoV-2 Genomics

Tools and Resources

Data Resources

• outbreak.info - interactive exploration of global SARS-CoV-2 data.
• Nextstrain SARS-CoV-2 resources - analysis and datasets curated by the Nextrain team.
• Data portals:
  • The European COVID-19 Data Platform
  • NCBI SARS-CoV-2 Resources
  • GISAID
• UK-specific resources:
  • COVID-19 Genomics UK Consortium
  • COVID–19 Genomic Surveillance built by the Wellcome Sanger Institute.

Web Tools

• Taxonium - a tool for large tree visualisation.

Other Courses

• Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data - using the Galaxy platform.
• The Power of Genomics to Understand the COVID-19 Pandemic - a general introduction to the COVID-19 pandemic.
• COVID-10 Data Analysis - ARTIC and CLIMB-BIG-DATA joint workshop with a series of lectures and tutorials available.