Introduction to SARS-CoV-2 Sequencing Data Analysis

🚧 These materials are under active development and not ready to be used for teaching. 🚧

Build Website Locally

Requirements

• R - https://www.r-project.org/
• pandoc - https://pandoc.org/installing.html

Step 1

First you need to install rmarkdown package. To install run:

Rscript -e 'install.packages("rmarkdown")'

Note: On Windows make sure that R is added to Windows PATH.

Step 2

To build the website run:

Rscript -e 'rmarkdown::render_site()'

If there is no error then you will see a _site directory, under which you will find all the html files.

License

These materials have been developed under a contract between the Bioinformatics Training Facility (University of Cambridge) and the New Variant Assessment Platform (NVAP) from Public Health England.

If you want to use these materials please get in touch with us at bioinfotraining @ bio.cam.ac.uk.