Antiicrobial propetide cleavage site predictor and Antimicrobial peptides classificator
Dependencies for instalation:
linux/OSX 64X
Anaconda/Miniconda (https://conda.io/docs/user-guide/install/index.html), for enviroment instalation
INSTALLATION:
from this folder:
conda env create -f proAmps.yml
source activate proAmps
Rscript install.peptides.R
USAGE:
activate the proAmps enviroment:
$ source activate proAmps
from this folder execute:
$ python proAmps -i test.fasta
EXAMPLES:
#Predict mature AMPs and direct results to file
python proAmps.py -i test.fasta -c -o ./mature_sequences.fasta
#Predict AMPs with previous mature AMP prediction, print result to STDOUT
python proAmps.py -i test.fasta -p
#Predict AMPs with no mature sequence prediction, direct results to file
python proAmps.py -i test.fasta -o ./annotated_sequences.fasta