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brianwalenz

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Commits on Apr 26, 2023

• Fix libbacktrace paths.

  brianwalenz

  committed
  70618e0

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• Fix rule for version.H.

  brianwalenz

  committed
  cb93a52

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Commits on Apr 21, 2023

• Resolve collision between namespace system and system().

  brianwalenz

  committed
  0ea9d1d

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• Update submodules to latest versions.

  brianwalenz

  committed
  f13aa72

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Commits on Apr 4, 2023

• Save read names in sqCache when loaded from fastq files.

  brianwalenz

  committed
  769108f

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Commits on Nov 22, 2022

• Initialize the unused zeroth sqCacheEntry too. Issue marbl#2177.

  brianwalenz

  committed
  b415de9

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Commits on Oct 17, 2022

• Skip, twice, zero-length reads loaded from fasta inputs.

  brianwalenz

  committed
  47a8d16

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• Fix printf() format string.

  brianwalenz

  committed
  1180ead

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• Add newline to log message on skipped tigs.

  brianwalenz

  committed
  6f20ba1

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Commits on Jul 7, 2022

• Update docs for canuIterationMax. Issue marbl#2142.

  brianwalenz

  committed
  2b7236f

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Commits on Jun 23, 2022

• Add support for using only a portion of a read in consensus.

  brianwalenz

  committed
  a534335

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Commits on Jun 20, 2022

• Free the EdlibAlignResult when backing up to a previous read (retryCandidate;).

  brianwalenz

  committed
  a711b17

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• Forget loaded reads and the unitigConsensus object after we process an imported tig.

  brianwalenz

  committed
  c33aab5

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Commits on Apr 27, 2022

• Fix sneaky partitioning edge cases resulting in a final small ovlSort job.

  brianwalenz

  committed
  9b4be3c

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• Update meryl for minor memory leak fix.

  brianwalenz

  committed
  92b643a

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• Merge verkko-consensus branch.

  brianwalenz

  committed
  762b6eb

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• Fix crash in tgStoreLoad caused by empty stuffedBits.

  brianwalenz

  committed
  8e10cfc

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• Fix stupidity with reserve() vs resize(); add -V support for partitioning.

  brianwalenz

  committed
  d4e4e8f

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• Add splitHaplotype back to the build. Removed in 65ce518.

  brianwalenz

  committed
  b1225ab

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Commits on Apr 14, 2022

• Update utility/ and seqrequester/.

  

  brianwalenz

  authored and

  skoren

  committed
  f2974cd

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• Fix crash detecting cycle when both reads are not in a tig. Issue marbl#2087.

  

  brianwalenz

  authored and

  skoren

  committed
  afdf6db

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• Update utility/ and seqrequester/.

  brianwalenz

  committed
  1893349

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• Stop building two unused programs.

  brianwalenz

  committed
  407b1a1

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• Requre C++17.

  brianwalenz

  committed
  eeb1033

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Commits on Apr 7, 2022

• Fix crash detecting cycle when both reads are not in a tig. Issue marbl#2087.

  brianwalenz

  committed
  acf1427

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Commits on Feb 17, 2022

• Fix memory leak in sequence storage.

  brianwalenz

  committed
  f0b1d60

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Commits on Jan 12, 2022

• Update submodules to get submodule build support (in seqrequester).

  brianwalenz

  committed
  58a6f4b

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Commits on Dec 1, 2021

• Fix/change output filename format, add options for maps.

  brianwalenz

  committed
  efb74aa

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• Add -dumpimport option to dump layout/reads from imported packages.

  brianwalenz

  committed
  1c4691d

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Commits on Nov 24, 2021

• Allow dumps of disjoint ranges.

  brianwalenz

  committed
  c5b776d

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Commits on Nov 12, 2021

• Fix array resize error; fix memory leak.

  brianwalenz

  committed
  8c40b4e

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Commits on Nov 11, 2021

• sort tigs again

  brianwalenz

  committed
  0a79d57

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• Fix minor bugs.

  brianwalenz

  committed
  0e2fb68

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Commits on Nov 10, 2021

• Allow sqCache to load reads from fasta/fastq, add layoutToPackage.

  brianwalenz

  committed
  5353e05

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• Remove, TEMPORARILY, splitHaplotype from the build, due to meryl-lookup interface changes.

  brianwalenz

  committed
  65ce518

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