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@SciLifeLab

Science For Life Laboratory

Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research

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  1. genologics genologics Public

    Forked from pekrau/genologics

    Python interface to the GenoLogics LIMS server via its REST API.

    Python 29 42

  2. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 13 16

  3. NouGAT NouGAT Public

    Forked from vezzi/NouGAT

    NouGAT is a pipeline that automates de novo assembly project tasks, generating a first draft assembly.

    Python 5 6

  4. TIDDIT TIDDIT Public

    TIDDIT - structural variant calling

    Cython 67 13

  5. courses courses Public

    Forked from henrythemes/jekyll-bootstrap-theme

    Course homepages for some of the courses given at SciLifeLab

    HTML 20 33

Repositories

Showing 10 of 53 repositories
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    SciLifeLab/scilifelab_epps’s past year of commit activity
    Python 5 14 0 0 Updated Oct 11, 2024
  • TACA Public Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    SciLifeLab/TACA’s past year of commit activity
    Python 13 MIT 19 13 (1 issue needs help) 1 Updated Oct 7, 2024
  • LIMS2DB Public Forked from Galithil/LIMS2DB
    SciLifeLab/LIMS2DB’s past year of commit activity
    Python 1 MIT 12 0 0 Updated Oct 3, 2024
  • genologics Public Forked from pekrau/genologics

    Python interface to the GenoLogics LIMS server via its REST API.

    SciLifeLab/genologics’s past year of commit activity
    Python 29 MIT 52 9 0 Updated Aug 26, 2024
  • statusdb Public

    Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

    SciLifeLab/statusdb’s past year of commit activity
    Python 2 MIT 9 0 0 Updated Aug 2, 2024
  • TIDDIT Public

    TIDDIT - structural variant calling

    SciLifeLab/TIDDIT’s past year of commit activity
    Cython 67 13 8 0 Updated Jul 19, 2024
  • genologics_sql Public Forked from Galithil/genologics_sql

    Python interface for the Genologics Postgres database.

    SciLifeLab/genologics_sql’s past year of commit activity
    Python 1 MIT 9 0 0 Updated Jul 16, 2024
  • umi-transfer Public

    A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.

    SciLifeLab/umi-transfer’s past year of commit activity
    Rust 6 MIT 2 1 0 Updated Jul 2, 2024
  • flowcell_parser Public

    Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

    SciLifeLab/flowcell_parser’s past year of commit activity
    Python 7 MIT 18 1 0 Updated Jan 22, 2024
  • facs Public

    Fast and Accurate Classification of Sequences using Bloom filters

    SciLifeLab/facs’s past year of commit activity
    Jupyter Notebook 16 9 8 0 Updated Apr 19, 2023
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