Merge pull request #1 from SevKohler/adverse_reaction_risk

added three new mappings, corrected tabacco

medical_data/evaluation/Tobacco_smoking_summary_v1.yml

@@ -11,4 +11,26 @@ mappings:
     value:
       alternatives:
         - path: "/data[at0001]/items[at0089]"
-        - path: "/data[at0001]/items[at0043]"
+        - path: "/data[at0001]/items[at0043]"
+
+  - type: "Measurement"
+    concept_id:
+      alternatives:
+        - code: 4151768 # pack years
+    observation_date:
+      alternatives:
+        - path: "../context"
+    value:
+      alternatives:
+        - path: "/data[at0001]/items[at0074]" # overall pack years
+
+  - type: "Observation"
+    concept_id:
+      alternatives:
+        - code: 44786668 # date quit tobacco smoking
+    observation_date:
+      alternatives:
+        - path: "../context"
+    value:
+      alternatives:
+        - path: "/data[at0001]/items[at0016]" # overall quit date

medical_data/evaluation/adverse_reaction_risk_v1.yml

@@ -0,0 +1,22 @@
+archetype_id: "openEHR-EHR-EVALUATION.adverse_reaction_risk.v1"
+
+mappings:
+  - type: "Observation"
+    concept_id:
+      alternatives:
+        - code: 35626089 #SNOMED Abnormal immune process (qualifier value)
+    observation_date:
+      alternatives:
+        - path: "/data[at0001]/items[at0027]" #onset of reaction
+        - path: "../context"
+    value:
+      alternatives:
+        - path: "/data[at0001]/items[at0002]"  # Substance, mandatory since the WHAT is essential here
+    unit:
+      optional: true
+      alternatives:
+        - path: "/data[at0001]/items[at0058]" # type of immune reaction
+    qualifier:
+      alternatives:
+        - path: "/data[at0001]/items[at0063]" # status, enforce since could be refuted
+

medical_data/evaluation/alcohol_consumption_summary_v1.yml

@@ -0,0 +1,35 @@
+archetype_id: "openEHR-EHR-EVALUATION.alcohol_consumption_summary.v1"
+
+mappings:
+  - type: "Observation"
+    concept_id:
+      alternatives:
+        - code: 4042860 # Finding relating to alcohol drinking behavior (finding)
+    observation_date:
+      alternatives:
+        - path: "../context"
+    value:
+      alternatives:
+        - path: "/data[at0001]/items[at0089]" # overall status
+
+  - type: "Observation"
+    concept_id:
+      alternatives:
+        - code: 619635 # Alcoholic drink intake
+    observation_date:
+      alternatives:
+        - path: "../context"
+    value:
+      alternatives: &valueAlternatives1
+        - path: "/data[at0001]/items[at0064]/items[at0023]" # Typical consumption (alcohol units)
+    unit:
+      alternatives:
+        - path: *valueAlternatives1
+
+  - type: "Observation"
+    concept_id:
+      alternatives:
+        - code: 4052945 # Stopped drinking alcohol (finding)
+    observation_date:
+      alternatives:
+        - path: "/data[at0001]/items[at0016]" # overall quit date

medical_data/observation/Head_circumference_v1.yml

@@ -0,0 +1,25 @@
+archetype_id: "openEHR-EHR-OBSERVATION.head_circumference.v1"
+
+mappings:
+  - type: "Measurement"
+    concept_id:
+      alternatives:
+        - code: 4181669
+    measurement_date:
+      alternatives:
+        - path: "data[at0001]/events[at0006]"
+    value:
+      alternatives: &valueAlternatives1
+        - path: "/data[at0001]/events[at0010]/data[at0003]/items[at0004]"
+    unit:
+      alternatives:
+        - path: *valueAlternatives1
+    range_low:
+      optional: true
+      alternatives: *valueAlternatives1
+    range_high:
+      optional: true
+      alternatives: *valueAlternatives1
+    operator_concept_id:
+      optional: true
+      alternatives: *valueAlternatives1