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Commits on Oct 13, 2021

• only take reverse complement of TCR fastq

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  snyquist2

  authored
  00e8080

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• debug

  snyquist2

  authored
  777d3c7

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Commits on Jun 29, 2021

• Merge branch 'master' of https://github.com/ShalekLab/tcrgo

  

  Sarah K. Nyquist

  committed
  84fb106

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• added option on alignment to specify if the input fastqs are the reverse complement or not

  

  Sarah K. Nyquist

  committed
  0a3f946

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Commits on Jun 7, 2021

• debug

  

  snyquist2

  authored and

  snyquist2

  committed
  1f66aee

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• change name of intermediate file to not conflict with inputs

  

  snyquist2

  authored and

  snyquist2

  committed
  b3a30fa

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• convert input fastqs to revcomp if the input is split into R1 and TCR fastqs

  

  Sarah K. Nyquist

  committed
  f52ca2a

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Commits on Jun 6, 2021

• debug

  

  snyquist2

  authored and

  snyquist2

  committed
  acccea5

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• fixed filter barcode conflicting option name

  

  snyquist2

  authored and

  snyquist2

  committed
  b6d65d9

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• debug

  

  snyquist2

  authored and

  snyquist2

  committed
  a63cbb9

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• Make filter barcodes based on quality score step optional.

  

  snyquist2

  committed
  e3614fb

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Commits on Mar 12, 2021

• README inputs table

  jggatter

  committed
  b8c71bb

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Commits on Mar 9, 2021

• Increased RAM

  jggatter

  committed
  487c90f

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Commits on Mar 8, 2021

• alpha3, collapsing and bug fixes

  jggatter

  committed
  3295774

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Commits on Dec 18, 2020

• 1.0.0-alpha.1

  jggatter

  committed
  530b1ae

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Commits on Oct 29, 2020

• Workflow adjustments, alignment fixes

  jggatter

  committed
  c2ea3a8

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Commits on Oct 28, 2020

• Alignment support for single/paired end FASTQ(s)

  jggatter

  committed
  0df9a5c

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Commits on Oct 21, 2020

• Workflow and Docker WIP

  jggatter

  committed
  9558d72

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Commits on Oct 15, 2020

• Fixed BC/UMI assignment

  jggatter

  committed
  e342e0d

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Commits on Oct 6, 2020

• CDR3 recovery fixed

  jggatter

  committed
  01fb94e

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Commits on Sep 30, 2020

• Drop-Seq Tools alignment wrapper

  jggatter

  committed
  c45c0a0

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