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Commits on Mar 24, 2023

• update docu

  yuhanH

  committed
  92960cb

Commits on Dec 29, 2020

• add context for fxn reference, fix news

  andrewwbutler

  committed
  b08bcdf

Commits on Jul 6, 2020

• pass weighted graphs in RunLeiden

  andrewwbutler

  committed
  3de0f46

Commits on Dec 5, 2019

• update docs for patch release - new roxygen2 version

  andrewwbutler

  committed
  26e0796

Commits on Oct 4, 2019

• implement method input for FindClusters.Seurat satijalab#1645 satijalab#2168

  TomKellyGenetics

  committed
  f65270f

Commits on Jul 29, 2019

• Minor style fixes

  mojaveazure

  committed
  d52d266

Commits on Jul 27, 2019

• refactoring for consistent style and performance satijalab#1858

  TomKellyGenetics

  committed
  fa2224a

Commits on Jul 22, 2019

• update leiden to call CRAN version with igraph method

  TomKellyGenetics

  committed
  b635647

Commits on Jun 5, 2019

• devtools::document updated these

  mojaveazure

  committed
  a6ec432

Commits on May 15, 2019

• add flag to skip singleton grouping step in FindClusters

  andrewwbutler

  committed
  e6e9a39

Commits on Apr 5, 2019

• FindClusters now stores identities in object[['seurat_clusters']]

  Show description for 4647e6f
  mojaveazure

  committed
  4647e6f

Commits on Feb 7, 2019

• Fix documentation

  

  Paul Hoffman

  committed
  59baddb

Commits on Jan 30, 2019

• pass arguments to leidenalg in python, check running on seurat object satijalab#1060

  TomKellyGenetics

  committed
  537c128

Commits on Jan 29, 2019

• Minor changes to Leiden clustering algorithm

  Show description for 42aa5c8
  

  Paul Hoffman

  committed
  42aa5c8

Commits on Jan 25, 2019

• add partition types and passing arguments to python algorithms TomKellyGenetics/leiden#2

  TomKellyGenetics

  committed
  8c550e9

Commits on Jan 14, 2019

• add Leiden algorithm to FindClusters and document function

  TomKellyGenetics

  committed
  86989d1

Commits on Oct 25, 2018

• remove all workflow-related code

  andrewwbutler

  committed
  ba2150f

Commits on Sep 14, 2018

• Fixes for R CMD check

  

  Paul Hoffman

  committed
  56e1124

• Fix broken examples

  

  Paul Hoffman

  committed
  303033b

Commits on Aug 14, 2018

• slim ModularityOptimizer verbosity, default n.start set to 10

  andrewwbutler

  committed
  d5accac

Commits on Aug 7, 2018

• Update documentation

  

  Paul Hoffman

  committed
  206d6d8

Commits on Aug 3, 2018

• devtools::document updated these

  

  Paul Hoffman

  committed
  5a80e29

Commits on Jul 18, 2018

• merge in develop

  andrewwbutler

  committed
  d22fccd

Commits on Jul 17, 2018

• more robust config files, allow function specific parameter setting

  andrewwbutler

  committed
  02939b6

Commits on Jul 12, 2018

• credit Nigel in FindClusters

  andrewwbutler

  committed
  9f9e5d9

Commits on Jul 10, 2018

• start updating FindClusters

  andrewwbutler

  committed
  fcea184

Commits on Mar 21, 2018

• add nn.eps parameter to FindClusters

  andrewwbutler

  committed
  73fb530

Commits on Feb 26, 2018

• remove k.scale from SNN related functions

  andrewwbutler

  committed
  71f409a

Commits on Feb 13, 2018

• fixes for CRAN, add examples

  andrewwbutler

  committed
  c073fe3

Commits on Jan 26, 2018

• Jaccard distance should be Jaccard index

  andrewwbutler

  committed
  b873ea4

Commits on Jan 23, 2018

• wrap new SNN functions into FindClusters

  andrewwbutler

  committed
  8069c3e

Commits on Aug 21, 2017

• Remove examples that take longer than five seconds

  

  Paul Hoffman

  committed
  a9c4719

Commits on Aug 18, 2017

• add BuildSNN examples and tests

  andrewwbutler

  committed
  67c1b16

• add some examples in cluster_determination

  andrewwbutler

  committed
  e70a7e1

Commits on Jul 24, 2017

• Seurat development

  

  Paul Hoffman

  committed
  65c876c

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