Homer/findpeaks improvements (nf-core#1436)

* fix(homer): Update expected file path to improve caching * docs(homer): Update findpeaks * test(homer): Add maketagdirectory dependency Co-authored-by: Robert A. Petit III <[email protected]>
SusiJo · Mar 25, 2022 · e3a5795 · e3a5795
1 parent d16f1ea
commit e3a5795
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Showing 3 changed files with 7 additions and 4 deletions.
diff --git a/modules/homer/findpeaks/main.nf b/modules/homer/findpeaks/main.nf
@@ -13,8 +13,8 @@ process HOMER_FINDPEAKS {
     tuple val(meta), path(tagDir)
 
     output:
-    tuple val(meta), path("*peaks.txt"), emit: txt
-    path  "versions.yml"               , emit: versions
+    tuple val(meta), path("*.peaks.txt"), emit: txt
+    path  "versions.yml"                , emit: versions
 
     when:
     task.ext.when == null || task.ext.when

diff --git a/modules/homer/findpeaks/meta.yml b/modules/homer/findpeaks/meta.yml
@@ -7,7 +7,9 @@ tools:
   - homer:
       description: |
         HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
-      documentation: http://homer.ucsd.edu/homer/
+      homepage: "http://homer.ucsd.edu/homer/index.html"
+      documentation: "http://homer.ucsd.edu/homer/"
+      tool_dev_url: "http://homer.ucsd.edu/homer/ngs/peaks.html"
       doi: 10.1016/j.molcel.2010.05.004.
       licence: ["GPL-3.0-or-later"]
 input:
@@ -29,7 +31,7 @@ output:
   - peaks:
       type: file
       description: The found peaks
-      pattern: "*peaks.txt"
+      pattern: "*.peaks.txt"
   - versions:
       type: file
       description: File containing software versions

diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
@@ -876,6 +876,7 @@ homer/annotatepeaks:
 
 homer/findpeaks:
   - modules/homer/findpeaks/**
+  - modules/homer/maketagdirectory/**
   - tests/modules/homer/findpeaks/**
 
 homer/maketagdirectory: