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Commits on Mar 25, 2022

• Homer/findpeaks improvements (nf-core#1436)

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  edmundmiller

  and

  rpetit3

  authored
  e3a5795

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• add module for panaroo, fix pirate tests (nf-core#1444)

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  rpetit3

  authored
  d16f1ea

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Commits on Mar 24, 2022

• feat(bbmap): Initialize pileup module (nf-core#1441)

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  edmundmiller

  and

  rpetit3

  authored
  6806cd1

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• style(deeptools): Indent script (nf-core#1439)

  edmundmiller

  authored
  fe08874

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• Update dragonflye to latest version (nf-core#1442)

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  rpetit3

  authored
  608bb22

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• update bakta to latest version (v1.4.0) (nf-core#1428)

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  rpetit3

  and

  ramprasadn

  authored
  dfbb0bc

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• [FIX/DOC] Broken Adding modules link (nf-core#1433)

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  jpfeuffer

  and

  edmundmiller

  authored
  debbcd9

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Commits on Mar 23, 2022

• update star/align to include an optional sam output (support for --chimOutType SeparateSAMold option) (nf-core#1378)

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  rannick

  and

  praveenraj2018

  authored
  1dddf1c

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Commits on Mar 22, 2022

• Add bracken (nf-core#1423)

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  Midnighter

  authored
  9c386c5

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Commits on Mar 21, 2022

• Untar unzip meta (nf-core#1408)

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  jfy133

  and

  drpatelh

  authored
  e080f4c

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• Add AdapterRemovalFixPrefix (nf-core#1424)

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  jfy133

  and

  apeltzer

  authored
  8c00897

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• update svdb to version 2.5.2 (nf-core#1390)

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  ramprasadn

  authored
  5297d27

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Commits on Mar 19, 2022

• Add pytest.ini (nf-core#1401)

  mahesh-panchal

  authored
  e69a4ce

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• Update test.yml (nf-core#1419)

  rpetit3

  authored
  16096ab

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Commits on Mar 18, 2022

• Add outputs for umitools dedup summary stats (nf-core#1422)

  drpatelh

  authored
  f425aa3

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• Deeparg singularity container fix 2 (nf-core#1406)

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  jfy133

  authored
  15c7190

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• Add centrifuge module (nf-core#1410)

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  sofstam

  authored
  ea41a8a

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• Prettier (nf-core#1405)

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  edmundmiller

  and

  ewels

  authored
  f080015

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• Manta consistancy (nf-core#1407)

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  nickhsmith

  and

  Smith Nicholas

  authored
  979e57b

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• Bat test (nf-core#1226)

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  edmundmiller

  and

  grst

  authored
  7436eeb

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Commits on Mar 17, 2022

• Fix DeepARG depenency issue with singularity containers (nf-core#1397)

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  jfy133

  and

  Midnighter

  authored
  f469045

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Commits on Mar 16, 2022

• round the < to ( to make markdown work for meta.yml (nf-core#1395)

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  lassefolkersen

  authored
  df60a58

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Commits on Mar 15, 2022

• Add BAM indexes as input for optitype module. (nf-core#1388)

  heuermh

  authored
  73aaecb

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• fix indent error, avoiding html tag confusion (nf-core#1393)

  mashehu

  authored
  18e72fa

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• ASCAT (nf-core#1332)

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  lassefolkersen

  authored
  d6244b4

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• Cnvpytor (nf-core#1297)

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  sima-r

  authored
  86ac223

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• Fix indentation in bwa/aln meta (nf-core#1392)

  ewels

  authored
  50417f5

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Commits on Mar 14, 2022

• Add core Biscuit tools (nf-core#1354)

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  6 peopleauthored
  801240a

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• Adapterremoval glob fix (nf-core#1391)

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  jfy133

  authored
  625098a

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Commits on Mar 11, 2022

• New module: NGSCheckMate (nf-core#1290)

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  SPPearce

  and

  mahesh-panchal

  authored
  79a9d5e

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Commits on Mar 10, 2022

• Bump chromap version 0.2.0 (nf-core#1374)

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  JoseEspinosa

  authored
  62da45b

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Commits on Mar 9, 2022

• added module seqkit replace (nf-core#1382)

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  4 peopleauthored
  24f0bdd

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• Decrease indent in seqtk/seq versions.yml output (nf-core#1384)

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  MillironX

  and

  sateeshperi

  authored
  b82d7ab

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• Add git aware option to pytest commands (nf-core#1379)

  mahesh-panchal

  authored
  e79bcd7

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Commits on Mar 8, 2022

• Fix for Maxbin2 emitting input files (nf-core#1376)

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  jfy133

  authored
  b78a4a4

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