DNA-Palindrome

Finding Palindrome and Quasi Palindrome sub-sequences from the entered DNA sequence

• The mail aim of this project is to find the possible sites for Hair-Pin structure formation in the DNA.
• Finding the Palindromic and Quasi-Palindromic sub-sequences is one the primary steps towards the detection of such loop.

Running the code:

• Clone the Repository in your local system

git clone https://github.com/The-Marvex/DNA-Palindrome.git

• Put the input sequence in the seq folder in txt format, the sequences can be broken down into new lines. The code will append them into a single line before running the checks.

• compile the code:

$ javac DNAChecker.java

• run the compiled code:

$ java DNAChecker