Adapt remaining algorithms (#39)

* feat: adapt remaining algorithms with

* fix(pcc): include manifest in Docker image

numenta_htm/Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/timeeval/python2-base:0.3.0 as build
+FROM ghcr.io/timeeval/python2-base:0.3.0
 
 LABEL maintainer="[email protected]"
 LABEL org.opencontainers.image.licenses="GPL-3.0"

ocean_wnn/Dockerfile

@@ -1,12 +1,14 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py /app/
 COPY ocean_wnn /app/ocean_wnn
+COPY manifest.json /app/
+COPY algorithm.py /app/

ocean_wnn/manifest.json

@@ -2,7 +2,7 @@
   "title": "OceanWNN",
   "description": "Implementation of https://doi.org/10.1016/j.oceaneng.2019.106129",
   "inputDimensionality": "univariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Yi Wang, Linsheng Han, Wei Liu, Shujia Yang, Yanbo Gao",
   "language": "Python",
   "type": "Detector",

omnianomaly/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python36-base:0.2.5
+FROM ghcr.io/timeeval/python36-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -12,4 +13,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY omni_anomaly /app/omni_anomaly
+COPY manifest.json /app/
 COPY algorithm.py /app/

omnianomaly/manifest.json

@@ -2,7 +2,7 @@
   "title": "OmniAnomaly",
   "description": "Implementation of https://doi.org/10.1145/3292500.3330672",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Ya Su, Youjian Zhao, Chenhao Niu, Rong Liu, Wei Sun, Dan Pei",
   "language": "Python",
   "type": "Detector",

pcc/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/pyod:0.2.5
+FROM ghcr.io/timeeval/pyod:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-
 # install algorithm dependencies
-COPY requirements.txt .
-RUN pip install -r ./requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py .
+COPY manifest.json /app/
+COPY algorithm.py /app/

pcc/manifest.json

@@ -2,7 +2,7 @@
     "title": "PCC",
     "description": "Implementation of http://citeseerx.ist.psu.edu/viewdoc/summary;jsessionid=003008C2CF2373B9C332D4A1DB035515?doi=10.1.1.66.299.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Mei-ling Shyu, Shu-ching Chen, Kanoksri Sarinnapakorn, Liwu Chang",
     "language": "Python",
     "type": "Detector",

pci/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY pci /app/pci
+COPY manifest.json /app/
 COPY algorithm.py /app/

pci/manifest.json

@@ -2,7 +2,7 @@
     "title": "PCI",
     "description": "Implementation of https://doi.org/10.1155/2014/879736",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Yufeng Yu, Yuelong Zhu, Shijin Li, Dingsheng Wan",
     "language": "Python",
     "type": "Detector",

phasespace_svm/Dockerfile

@@ -1,12 +1,14 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
-COPY requirements.txt ./
-RUN pip install -r ./requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY phasespace.py .
-COPY algorithm.py .
+COPY phasespace.py /app/
+COPY manifest.json /app/
+COPY algorithm.py /app/

phasespace_svm/manifest.json

@@ -2,7 +2,7 @@
     "title": "PhaseSpace-SVM",
     "description": "Implementation of https://doi.org/10.1109/IJCNN.2003.1223670.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Junshui Ma and Simon Perkins",
     "language": "Python",
     "type": "Detector",

pst/Dockerfile

@@ -1,7 +1,7 @@
 FROM ghcr.io/timeeval/r4-base:0.3.2
 
 LABEL maintainer="[email protected]"
-LABEL org.opencontainers.image.licenses=MIT
+LABEL org.opencontainers.image.licenses="GPL-3.0"
 
 # install R-install requirements
 RUN set -eux; \

random_black_forest/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY ./requirements.txt .
-RUN pip install -r requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY ./algorithm.py .
-COPY ./model.py .
-COPY ./manifest.json .
+COPY model.py /app/
+COPY manifest.json /app/
+COPY algorithm.py /app/

random_black_forest/manifest.json

@@ -3,7 +3,7 @@
     "description": "An ensemble of multiple multi-output random forest regressors based on different feature subsets (requested by RollsRoyce). The forecasting error is used as anomaly score.",
     "inputDimensionality": "multivariate",
     "learningType": "semi-supervised",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl",
     "language": "Python",
     "type": "Detector",

robust_pca/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY robust_pca /app/robust_pca
+COPY manifest.json /app/
 COPY algorithm.py /app/

robust_pca/manifest.json

@@ -2,7 +2,7 @@
     "title": "RobustPCA",
     "description": "Implementation of https://arxiv.org/pdf/1801.01571.pdf",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Randy Paffenroth, Kathleen Kay, Les Servi",
     "language": "Python",
     "type": "Detector",

s_h_esd/Dockerfile

@@ -1,10 +1,11 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-3.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY requirements.txt .
-RUN pip install -r requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
 COPY . /app/

s_h_esd/manifest.json

@@ -2,7 +2,7 @@
   "title": "S-H-ESD (Twitter)",
   "description": "Implementation of http://citeseerx.ist.psu.edu/viewdoc/summary;jsessionid=003008C2CF2373B9C332D4A1DB035515?doi=10.1.1.66.299",
   "inputDimensionality": "univariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Jordan Hochenbaum, Owen S. Vallis, Arun Kejarival",
   "language": "Python",
   "type": "Detector",

sand/README.md

@@ -1,4 +1,4 @@
-# SAND (unsupervised subsequence anomaly detection in data streams.))
+# SAND (unsupervised subsequence anomaly detection in data streams.)
 
 > **Restricted Access!!**
 

sand/manifest.json

@@ -2,7 +2,7 @@
     "title": "SAND",
     "description": "Implementation of SAND described in http://www.vldb.org/pvldb/vol14/p1717-boniol.pdf.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl",
     "language": "Python",
     "type": "Detector",

sarima/Dockerfile

@@ -1,12 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+# custom license has no abbreviation
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
-COPY requirements.txt .
+COPY requirements.txt /app/
 RUN set -eux; \
-    pip install --no-cache-dir -r requirements.txt; \
+    pip install --no-cache-dir -r /app/requirements.txt; \
     find /usr/local -depth \
 		\( \
 			\( -type d -a \( -name test -o -name tests -o -name idle_test \) \) \
@@ -15,5 +16,7 @@ RUN set -eux; \
 		\) -exec rm -rf '{}' +; \
     rm -rf /tmp/* /var/tmp/* ~/.cache/pip
 
-COPY sarima.py .
-COPY algorithm.py .
+COPY sarima.py /app/
+COPY LICENSE /app/
+COPY manifest.json /app/
+COPY algorithm.py /app/

sarima/LICENSE

@@ -7,6 +7,9 @@ All rights reserved.
 Copyright (c) 2009-2018 statsmodels Developers.
 All rights reserved.
 
+Copyright (C) 2020-2023 Sebastian Schmidl and Phillip Wenig.
+All rights reserved.
+
 
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:

sarima/manifest.json

@@ -2,7 +2,7 @@
     "title": "SARIMA",
     "description": "Implementation of SARIMA method described in https://milets18.github.io/papers/milets18_paper_19.pdf.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl",
     "language": "Python",
     "type": "Detector",

series2graph/manifest.json

@@ -2,7 +2,7 @@
     "title": "Series2Graph",
     "description": "Implementation of https://doi.org/10.14778/3407790.3407792.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Paul Boniol, Themis Palpanas, Mohammed Meftah, Emmanuel Remy",
     "language": "Python",
     "type": "Detector",

sr/Dockerfile

@@ -1,4 +1,4 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as build
+FROM ghcr.io/timeeval/python3-base:0.3.0 as build
 
 COPY anomalydetector /app/anomalydetector
 
@@ -11,11 +11,13 @@ RUN set -eux; \
 RUN pip install Cython
 RUN cd /app/anomalydetector/; python setup.py install
 
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as eval
+FROM ghcr.io/timeeval/python3-base:0.3.0 as eval
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY --from=build /usr/local/lib/python3.7/site-packages /usr/local/lib/python3.7/site-packages
+COPY manifest.json /app/
 COPY algorithm.py /app/

sr/manifest.json

@@ -2,7 +2,7 @@
     "title": "Spectral Residual (SR)",
     "description": "Implementation of https://doi.org/10.1145/3292500.3330680",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Hansheng Ren, Bixiong Xu, Yujing Wang, Chao Yi, Congrui Huang, Xiaoyu Kou, Tony Xing, Mao Yang, Jie Tong, Qi Zhang",
     "language": "Python",
     "type": "Detector",

sr_cnn/Dockerfile

@@ -1,4 +1,4 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5 as build
+FROM ghcr.io/timeeval/python3-base:0.3.0 as build
 
 COPY anomalydetector /app/anomalydetector
 
@@ -7,12 +7,14 @@ RUN apt-get install build-essential -y
 RUN pip install --no-cache-dir Cython tqdm torchvision==0.8.2
 RUN cd /app/anomalydetector/; python setup.py install
 
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5 as eval
+FROM ghcr.io/timeeval/python3-base:0.3.0 as eval
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY --from=build /usr/local/lib/python3.7/site-packages /usr/local/lib/python3.7/site-packages
 COPY srcnn /app/srcnn
+COPY manifest.json /app/
 COPY algorithm.py /app/

sr_cnn/manifest.json

@@ -2,7 +2,7 @@
   "title": "SR-CNN",
   "description": "Implementation of https://doi.org/10.1145/3292500.3330680",
   "inputDimensionality": "univariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Hansheng Ren, Bixiong Xu, Yujing Wang, Chao Yi, Congrui Huang, Xiaoyu Kou, Tony Xing, Mao Yang, Jie Tong, Qi Zhang",
   "language": "Python",
   "type": "Detector",

stamp/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/tsmp:0.2.5
+FROM ghcr.io/timeeval/tsmp:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.r"
 

stamp/manifest.json

@@ -2,7 +2,7 @@
     "title": "STAMP",
     "description": "Implementation of https://doi.org/10.1109/ICDM.2016.0179.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Chin-Chia Michael Yeh, Yan Zhu, Liudmila Ulanova, Nurjahan Begum, Yifei Ding, Hoang Anh Dau, Diego Furtado Silva, Abdullah Mueen, Eamonn Keogh",
     "language": "R",
     "type": "Detector",

stomp/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/tsmp:0.2.5
+FROM ghcr.io/timeeval/tsmp:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.r"
 

stomp/manifest.json

@@ -2,7 +2,7 @@
     "title": "STOMP",
     "description": "Implementation of https://doi.org/10.1109/ICDM.2016.0085.",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Yan Zhu, Zachary Zimmerman, Nader Shakibay Senobari, Chin-Chia Michael Yeh, Gareth Funning, Abdullah Mueen, Philip Brisk, Eamonn Keogh",
     "language": "R",
     "type": "Detector",