1.0.4 (#77)

* trying to change class initializaiton to fix the bug reported in #76

* Changing auto* to auto to stop issue 76

* Changing auto* to auto to stop issue 76

* Updating the format of estimated false discovery rate output

* Fixed a bug with calculating coverage

1.0.3 (#71)

* Updated --cite to point to the oup article

* Updated version string

* Added a --show_count (-c) flag that results in copy number, #insertions, #deletions, and #substitutions to be output. Implemented in json

* Added a --show_count (-c) flag that results in copy number, #insertions, #deletions, and #substitutions to be output. Implemented in json and tabfilewriter

* Updated README citation info, paper info
Updated github workflow to match https://github.com/TravisWheelerLab/release-workflow-example

1.0.3 (#71)

* Updated --cite to point to the oup article

* Updated version string

* Added a --show_count (-c) flag that results in copy number, #insertions, #deletions, and #substitutions to be output. Implemented in json

* Added a --show_count (-c) flag that results in copy number, #insertions, #deletions, and #substitutions to be output. Implemented in json and tabfilewriter

* Updated README citation info, paper info
Updated github workflow to match https://github.com/TravisWheelerLab/release-workflow-example

Update release.yml (#75)

More substantial adjustments to the other workflow are necessary, we're reverting back

Update release.yml (#74)

changing the github workflow again...

Update release.yml (#73)

Fixing cmake problems...

Update release.yml (#72)

Added cmake support to the git workflow

1.0.2 (#67)

* Changed the control flow in main to allow a try/catch of a bad_alloc exception.

* Adjusted memory allocation behavior (larger models will use slightly less memory)

1.0.2b (#68)

* Further improvement to ULTRA's automatic window sizing

* If built without release optimizations, ULTRA will now note that in -h.

Daniel olson patch 1 (#65)

* Update build.yml

Updating the build.yml file (cmake wasn't working)

* Update build.yml

Fixed? Maybe?

* Update build.yml