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Releases: TurakhiaLab/ROADIES

New LASTZ version

10 Mar 00:43
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Added a new version of last-1.04.45, which supports genome sizes > 4 GB.

v0.1.6

13 Jan 00:59
a868e2b
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v0.1.6 Pre-release
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Fixed mashtree commands

v0.1.5

05 Jan 20:31
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v0.1.5 Pre-release
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New release for updated bioconda recipe

  • Modified ASTRAL-Pro2 to ASTRAL-Pro3
  • Added --deep mode for deeper evolutionary timescales
  • Added LASTZ compilation script (instead of having precompiled binary). This will relax the requirement of having GLIBC version >= 2.29.

v0.1.4

03 Aug 06:10
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v0.1.4 Pre-release
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Removed separate PASTA environments

v0.1.3

03 Aug 00:25
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v0.1.3 Pre-release
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New release (only for Bioconda recipes - don't use it for script or docker based installation)

Made changes for ROADIES to support Python version 3.9 (since bioconda recipe of PASTA does not support Python 3.11)

Mashtree command changed to mashtree.pl

v0.1.2

10 Jul 22:22
77239bb
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Fixed typo in tips_in_gene_trees file

v0.1.1

10 Jul 21:55
fae025c
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v0.1.1 Pre-release
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  1. Fixed typo in tips_in_gene_trees.py
  2. Removed Boost STATIC LIB dependency

Initial Release

02 Jul 18:22
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v0.1.0

updated wiki