Jupyter notebooks for the Natural Language Processing with Transformers book

Visualization techniques for the latent space of a convolutional autoencoder in Keras

metaX: a flexible and comprehensive software for processing omics data.

A cross-platform proteomics data analysis suite

R package - MSstats

Interactive Linear Algebra, free online textbook at Georgia Tech

RStudio add-in to make plots interactively with ggplot2

mzTab Reporting MS-based Proteomics and Metabolomics Results

This is special edition (fork) of Kloxo with many features not existing on Kloxo official release (6.1.12+). This fork named as Kloxo-MR (meaning 'Kloxo fork by Mustafa Ramadhan')

ProteoGenomics Converter tool

Generates and updates track hubs for use with the Ensembl Track Hub Registry.

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

The LaTeX beamerposter package

Materials for the 2017 ASMS Annual Conference R Workshop

SQE attempts to provide first-class NetBeans IDE integration for different software quality tools. Current development builds are available at "http://deadlock.netbeans.org/job/sqe/".

This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard.