- Gothenburg, Sweden
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SPOT-BGC Public
A Snakemake Pipeline to Output meTagenomics-derived Biosynthetic Gene Clusters
Shell MIT License UpdatedJan 29, 2025 -
OrthoBenchmark2023 Public
Benchmarking scripts for orthologous clustering programs
Python MIT License UpdatedMar 16, 2024 -
BBT045-Phylo-2024 Public
Material for the Phylogenetics module of BBT045, in Python as of 2024
HTML MIT License UpdatedFeb 20, 2024 -
sysbio.se Public
Forked from SysBioChalmers/sysbio.seThe sysbio.se source code
CSS MIT License UpdatedApr 18, 2023 -
Teaching-BBT045 Public
GitHub repository for teaching materials prepared for Phylogenomics section of Applied BIoinformatics (BBT045)
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LearningR Public
Repository made during "Reproducible Research in R" course: https://gitlab.com/rostools/r-cubed
R UpdatedJan 18, 2023 -
TrichoCompare Public
Reproducible workflow for my MSc Thesis project: "Comparing the efficacy of algorithmic approaches to the functional annotation of proteins in Trichomonad parasites"
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Parsers_Resources Public
A sampling of useful scripts I've written as part of my MSc Thesis work, that I have chosen to post publicly prior to the completion of my Thesis project.
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GPS_Py Public
Adaptation into Python and extension of the GPS program by Homolog.us (https://github.com/homologus/GPS)
Python MIT License UpdatedMar 20, 2021 -
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Bioinfo_MSc_scripts Public
Repository for working, good quality scripts written for my MSc program
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FASTA_Analysis_Toolbox Public
Python script for performing a number of analyses on an input FASTA file
Python MIT License UpdatedJan 30, 2021 -
BLAST_Parser Public
Python program for parsing NCBI BLASTp results
Python MIT License UpdatedJan 30, 2021 -
Python2020Demo Public
Forked from Jakob37/Python2020DemoDemonstration repository for the Python course given to the Bioinformatic's masters programme
Python UpdatedOct 12, 2020