RDML-Python

A python library to handle RDML files.

Install with pip3

apt install python3 python3-pip

pip3 install rdmlpython

Clone the repository

git clone --recursive https://github.com/RDML-consortium/rdmlpython.git rdmlpython

Setup the environment

Install the dependencies:

sudo apt install python python-pip

pip install lxml numpy

Command line functions

Help on command line options:

python3 rdml.py -h

Validate RDML files:

python3 rdml.py -v data.rdml

Run LinRegPCR:

python3 rdml.py -lrp data.rdml --pcrEfficiencyExl 0.05 --excludeNoPlateau --excludeEfficiency "mean" -o out_data.rdml --saveResults temp_1_out_results.tsv --timeRun