Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

Rust crate for numpy NPY files

Rust bindings for the C++ api of PyTorch.

A program for the analysis of single cell nanopore long read data

Create book from markdown files. Like Gitbook but implemented in Rust

🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps

Command-line sampling profiler for macOS, Linux, and Windows

Ecosystem of libraries and tools for writing and executing fast GPU code fully in Rust.

Limbo is a project to build the modern evolution of SQLite.

Multimodal Data (.h5mu) implementation for Python

muon is a multimodal omics Python framework

🦀 A Programming Language Made using Rust 🦀

A Julia package for fitting (statistical) mixed-effects models

An interpreter for Rust's mid-level intermediate representation

🐉 Making Rust a first-class language and ecosystem for GPU shaders 🚧

Multi-threaded BLAS-like library that provides pure Julia matrix multiplication

A community-maintained Python framework for creating mathematical animations.

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

blingful character graphics/TUI library. definitely not curses.

long read RNA-seq quantification

Notebooks for the "JAX in Action" book

SingleCell Nanopore sequencing data analysis

Paper list about hyperbolic embedding, hyperbolic models,hyperbolic applications

A comprehensive library for computational molecular biology

Python package with CLI for the analysis of single cell methylation data.

NumPy & SciPy for GPU

A local-first personal finance app

Genomic interval operations on Pandas DataFrames