🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, Jav…

System for building static dependent libraries for CRAN packages

Lumi is a Desktop App that offers a collection of tools to create, edit and share digital content with your class.

Read alignment statistics for metagenomics

Pairwise multilevel comparison using adonis

Uncover organisms' metabolic blueprints

R client for various CrossRef APIs

A Digital Garden Theme for Jekyll. Jekyll Garden lets you create a static HTML version of your markdown notes and publish via Github pages. Made for Obsidian users!

Code and manual of the endoR R-package (Ruaud et al, in preparation).

Resources for people running research groups.

Efficient Constrained Based Modelling in R

🎨 Simplistic, responsive jekyll based open source theme

libMesh github repository

Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data

📝A simple and elegant markdown editor, available for Linux, macOS and Windows.

R package to quickly obtain count vectors from indexed bam files

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

ATLAS - Three commands to start analyzing your metagenome data

R package for mass and molecular formula calculations

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies

FELLA: an R package for Metabolomics data enrichment through diffusion

mbImpute: an accurate and robust imputation method for microbiome data

Implements both real-valued branches of the Lambert-W function in R without the need for installing the entire GSL.

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

A particle simulation engine based on a port of d3-force

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.