Phylogeny

Generate tree file

code: tree_gen.py output: mtDNA_EntireTree.nw

Query tree

code: tree_query.haploInput.py; tree_query.SNPinput.py
input: mtDNA_EntireTree.nw & SNPs or nodes input files output: result_from_treequery.txt

Generate subtree

code: subtree.py
input: tree_query.py output output: subtree.nw

draw tree

code: tree_draw.py input: subtree.py output subtree.nw output: tree plot