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Fiji library to perform image segmentation based on the Weka learning schemes

Java 115 62 Updated Sep 28, 2024

ilastik-shell, applets, and workflows to string them together.

Python 360 136 Updated Mar 7, 2025

Digital Twin Microscope

Jupyter Notebook 14 6 Updated Dec 17, 2024

pvaPy provides Python bindings for EPICS pvAccess

C++ 38 23 Updated Jan 16, 2025

Python client for Apache Kafka

Python 5,694 1,421 Updated Mar 8, 2025

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Python 179 56 Updated Mar 3, 2025

Beamline 5.3.1 Controls and

Jupyter Notebook 1 1 Updated Nov 20, 2024

Computational Reverse Engineering Analysis of Scattering Experiments Method for Interpretation of 2D Small-Angle Scattering Profiles (CREASE-2D)

Jupyter Notebook 3 1 Updated Jan 27, 2025
Python 14 3 Updated Dec 10, 2024

Code for All models are wrong, some are useful: Model Selection with Limited Labels.

Jupyter Notebook 4 Updated Oct 18, 2024

A python library for reduction of 2-dimensional grazing-incidence and fibre diffraction data

Python 6 19 Updated May 25, 2023
Jupyter Notebook 2 1 Updated Sep 18, 2024

A Lean Persistent Homology Library for Python

C++ 290 62 Updated Mar 8, 2025

The library supports segmentation/reassembly (SAR) and control plane functionality of EJFAT project.

C++ 3 1 Updated Mar 8, 2025

A set of jupyter notebooks for the practice of TDA with the python Gudhi library together with popular machine learning and data sciences libraries.

Jupyter Notebook 395 118 Updated Dec 20, 2024

A high-performance topological machine learning toolbox in Python

Python 883 182 Updated Jun 18, 2024

Topological Signal Processing in Python

Jupyter Notebook 26 10 Updated Mar 7, 2025

AlabOS: Managing the workflows in the Autonomous lab

Python 40 8 Updated Oct 22, 2024

Modern, open source microCT methods to enhance accessibility, scalability, and reproducibility

Jupyter Notebook 7 Updated Aug 13, 2024

Computer Vision Tutorial for the ALS User Meeting 2024

4 Updated Aug 13, 2024

A new markup-based typesetting system that is powerful and easy to learn.

Rust 38,198 1,047 Updated Mar 7, 2025

Interconnected Science Ecosystem - Software Development Kit (INTERSECT-SDK)

Python 5 2 Updated Mar 4, 2025

The go-to optimizer in accelerator control room

Python 19 13 Updated Mar 7, 2025

Flexible high-level optimization in Python

Python 78 25 Updated Mar 5, 2025

NBS Viewer Program for Tiled

Python 1 1 Updated Mar 9, 2025

A tool to support interactive machine learning for cryoET data

Python 11 5 Updated Aug 30, 2024

Scripts to deploy fusion application on DOE systems with Globus Flows

Python 3 2 Updated Jul 22, 2024

ESnet-JLab FPGA Accelerated Transport

C++ 2 Updated Jan 29, 2025

Fast Azimuthal Integration in Python

Python 112 97 Updated Mar 9, 2025

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Common Workflow Language 1,460 196 Updated Dec 5, 2024
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