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thorough improvement of shinyCircos for major revision of Bioinformatics
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@venyao
venyao committed Oct 16, 2017
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119 changes: 98 additions & 21 deletions README.html
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14 changes: 9 additions & 5 deletions README.md
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Expand Up @@ -7,14 +7,16 @@ This is the repository for the Shiny application presented in "shinyCircos: an R

# Use shinyCircos online

shinyCircos is deployed at https://yimingyu.shinyapps.io/shinycircos/ for online use.
shinyCircos is idle until you activate it by accessing this URL.
shinyCircos is deployed at https://yimingyu.shinyapps.io/shinycircos/ and http://shinycircos.ncpgr.cn/ for online use.
shinyCircos is idle until you activate it by accessing the two URLs.
So it may take some time when you access this URL for the first time.
Once it was activated, shinyCircos could be used smoothly and easily.

*****

# Launch shinyCircos directly from R and GitHub
# <font color="red">Launch shinyCircos directly from R and GitHub (preferred approach)</font>

User can choose to run shinyCircos installed locally for a more preferable experience.

**Step 1: Install R and RStudio**

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```
install.packages("shiny")
install.packages("circlize")
install.packages("RColorBrewer")
install.packages("RColorBrewer")
install.packages("data.table")
# try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicRanges")
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```
install.packages("shiny")
install.packages("circlize")
install.packages("RColorBrewer")
install.packages("RColorBrewer")
install.packages("data.table")
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicRanges")
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