Structural Variant Identification Method using Genome Assemblies

Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

The MafFilter genome alignment processor

Conserved Noncoding Elements (CNEs) Identification and Visualisation

A JBrowse plugin to view multiple alignment format (MAF) files

A pipeline for processing data in a comparative genomics project.

TAD-loop identification

Code used to analyse WGS data of giraffe in Coimbra et al. 2021

Identification of segmental duplications in the genome

perl codes for filtering candidates pseudogenes

Convergence event counting and probability calculation according to Zou and Zhang, 2015, Mol. Biol. Evol.

DNA序列比对结果 可视化展示工具

VGP repository for the genome assembly working group

Tools for improving the sensitivity and specificity of genome alignments

Assemble and following pipeline used in wisent genome paper.