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By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

Shell 319 285 Updated Dec 21, 2018

Easy and Clear Pipeline With LLM-Automation to Preprocess Medical Image for Everybody

Jupyter Notebook 32 2 Updated Dec 19, 2024

Config files for my GitHub profile.

4 Updated Oct 10, 2024

PyTorch deep learning projects made easy.

Python 4,796 1,087 Updated Jun 4, 2024

A novel non-pretrained deep supervision network for polyp segmentation

Python 7 2 Updated Jun 5, 2024

Using DUCK-Net for polyp image segmentation. ( Nature Scientific Reports 2023 )

Jupyter Notebook 109 26 Updated Nov 27, 2023

U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

Python 726 71 Updated Apr 4, 2024

Only implemented through torch: "bi - mamba2" , "vision- mamba2 -torch". support 1d/2d/3d/nd and support export by jit.script/onnx;

Python 237 9 Updated Dec 11, 2024
Python 9 Updated Jul 28, 2024

pytorch搭建自己的unet网络,训练自己的数据集。

Python 289 28 Updated Apr 6, 2023
Python 71 22 Updated Oct 28, 2019

这是一个unet-pytorch的源码,可以训练自己的模型

Python 1,437 269 Updated May 17, 2024

Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125

Python 14,443 1,655 Updated Jan 3, 2025

PyTorch implementation of the U-Net for image semantic segmentation with high quality images

Python 9,516 2,534 Updated Aug 11, 2024
Python 7 Updated May 23, 2024

Collection of awesome medical dataset resources.

474 35 Updated Jan 3, 2025

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

Python 1,101 170 Updated Dec 23, 2024

We give a special Unet structure which contain BatchNormLayer and different size input to increase Model feeling. Besides we use CarvanaData to apply our net, and we compare U-Net-Pro and Unet.

Python 4 1 Updated Oct 27, 2023

本仓库旨在介绍如何通过源码编译的方法成功安装mamba,可解决selective_scan_cuda和本地cuda环境冲突的问题

53 1 Updated Oct 30, 2024

医学影像数据集列表 『An Index for Medical Imaging Datasets』

2,798 383 Updated Aug 15, 2024

Precision, recall, f1-score, AUC, loss, accuracy and ROC curve are often used in binary image recognition evaluation issue. The repository calculates the metrics based on the data of one epoch rath…

Jupyter Notebook 9 3 Updated Mar 3, 2020

The codes can change the frame number in a video arbitrarily. For example, we can change the frame number to 80 for a video which has 41 frame.

Python 7 Updated Sep 3, 2023

这里包含了Mamba的代码以及b站对应的讲解视频

Python 74 4 Updated Apr 30, 2024

Self-Attention Graph Pooling [ICML-2019]

Python 8 2 Updated Apr 19, 2024

Do Transformers Really Perform Bad for Graph Representation? [NIPS-2021]

Python 36 8 Updated Oct 28, 2024
Python 1 1 Updated Nov 26, 2023

这里包含了Vit的代码以及数据集部分。

Python 112 5 Updated Mar 17, 2024

SimGNN: A Neural Network Approach to Fast Graph Similarity Computation [WSDM-2019]

Python 5 2 Updated Apr 18, 2024

GraphDTA: Predicting drug-target binding affinity with graph neural networks

Python 233 79 Updated Apr 13, 2021

Graphormer Based Protein Sequence Design

Python 24 4 Updated Feb 2, 2024
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