A deep learning-based tool to identify splice variants

An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.

Detection of m6A from direct RNA-Seq data

A high-performance, Pythonic language for bioinformatics

This is the ensembldb development repository.

Fast, sensitive and accurate integration of single-cell data with Harmony

RNA modifications detection from Nanopore dRNA-Seq data

Disentangled Variational Auto-Encoder in TensorFlow / Keras (Beta-VAE)

Understanding disentangling in beta-VAE (Keras)

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

Peak calling and differential methylation for MeRIP-Seq

ChIP-seq DC and QC Pipeline

Interactive visulizations for track-based genomic data in R

Differential expression of RNA-seq data using the Negative Binomial