updated pkgdown site

aberHRML · Sep 29, 2021 · 94ea8bf · 94ea8bf
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commit 94ea8bf
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Showing 35 changed files with 130 additions and 178 deletions.
diff --git a/R/calc.R b/R/calc.R
@@ -19,11 +19,11 @@ calcBinMeasures <- function(pks,cls){
                               'polarity',
                               'bin')))) %>%
     summarise(purity = binPurity(mz,
-    																													intensity,
-    																													dp = binnerDP()),
+                                 intensity,
+                                 dp = binnerDP()),
               centrality = binCentrality(mz,
-              																											intensity,
-              																											dp = binnerDP()),
+                                         intensity,
+                                         dp = binnerDP()),
               .groups = 'drop')
 
   return(binMeasures)

diff --git a/R/get.R b/R/get.R
@@ -78,31 +78,6 @@ getHeaders <- function(files){
 	file_headers <- available_header_temps %>% 
 		future_map(readRDS)
 
-	file_names <- files %>% 
-		basename() %>%
-		file_path_sans_ext(compression = TRUE)
-
-	temp_file_names <- available_header_temps %>% 
-		basename() %>% 
-		file_path_sans_ext()
-
-	unavailable_headers <- files[!(file_names %in% temp_file_names)]
-
-	if (length(unavailable_headers > 0)){
-		headers <- files %>% 
-			future_map(~{
-				ms <- .x %>%
-					openMSfile(backend = 'pwiz') 
-
-				file_header <- ms %>%
-					header()
-
-				return(file_header)
-			})	
-
-		file_headers <- c(file_headers,headers)
-	}
-
 	file_headers <- file_headers %>%
 		set_names(files) %>%
 		bind_rows(.id = 'FileName') %>%

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/binneR.html b/docs/articles/binneR.html
diff --git a/docs/articles/binneR_files/figure-html/binCentrality-1.png b/docs/articles/binneR_files/figure-html/binCentrality-1.png
diff --git a/docs/articles/binneR_files/figure-html/binPurity-1.png b/docs/articles/binneR_files/figure-html/binPurity-1.png
diff --git a/docs/articles/binneR_files/header-attrs-2.11/header-attrs.js b/docs/articles/binneR_files/header-attrs-2.11/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 1.6.1
 pkgdown_sha: ~
 articles:
   binneR: binneR.html
-last_built: 2021-08-03T11:35Z
+last_built: 2021-09-29T14:47Z
 
diff --git a/docs/reference/BinParameters-class.html b/docs/reference/BinParameters-class.html
diff --git a/docs/reference/Binalysis-class.html b/docs/reference/Binalysis-class.html
diff --git a/docs/reference/binParameters.html b/docs/reference/binParameters.html
diff --git a/docs/reference/binneRlyse.html b/docs/reference/binneRlyse.html
diff --git a/docs/reference/detectInfusionScans.html b/docs/reference/detectInfusionScans.html
diff --git a/docs/reference/detectParameters.html b/docs/reference/detectParameters.html