A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

List of genome assembly tools

🔬 Assemble large genomes using short reads

Copy playlists and liked music from Spotify to YTMusic

Efficient and fast querying and parsing of GTDB's data

Genome browser and variant annotation

A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.

skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.

Tutorials to get started in bioinformatics

A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

A variational framework for inferring population structure from SNP genotype data.

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Rapid comparison and dereplication of genomes

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Assembly statistic visualisation

a place to store tutorials

A single molecule sequence assembler for genomes large and small.

🔬 Path to a free self-taught education in Bioinformatics!

Sydney Phylogenetics Workshop

Calculate summary statistics and manipulate multiple sequence alignments

SPANDx - Comparative genomics for next-generation haploid sequence data

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads