Comparison of Adaptive Immune Receptor Repertoires

TCRcloud is an Adaptive Immune Receptor Repertoire (AIRR) visualization and comparison tool

TCR and BCR assembly from RNA-seq data

Clonotype Neighbor Graph Analysis

regex based motif discovery

Ultrafast TCR clustering algorithm based on geometric isometry

Highly specific clustering of T cell receptor CDR3s

CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering re…

flexible CDR based distance metrics

Pascal to C++ converter

A script to extract data from ÄKTA/UNICORN result-files (.res)

Command line tool to run Cell Ranger using AWS

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

Decombinator v5: fast, error-correcting analysis of TCR repertoires

Docker image that sets up a Galaxy with the Immune Repertoire and SHM pipelines.

Immunoglobulin and T-Cell receptor rearrangement software

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

📚 Tools and databases for analyzing HLA and VDJ genes.

Two ImageJ plugins to count mammalian cells in the pictures of cell suspension in a standard hemocytometer.

Enable Sidecar on Unsupported iPads and Macs running iPadOS 13 and macOS Catalina

AMD & NVIDIA eGPUs for all Thunderbolt Macs.

Display-agnostic acceleration of macOS applications using external GPUs.

Google Chrome Extension API for Safari

repository containing analysis scripts and auxiliary files

Color picker plugin for Sublime Text 2 and 3 (Mac OS X)

A SingleCell RNASeq pre-processing snakemake workflow

A shiny interface to openCyto

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

A fast and sensitive gapped read aligner