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Starred repositories

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k-mer based genomics

Python 3 2 Updated Jul 31, 2023

Exploring the dynamics of the butane molecule along with TPT estimation

Jupyter Notebook 1 Updated Oct 30, 2024

A curated list of awesome computational cryo-EM methods.

Jupyter Notebook 108 12 Updated Oct 23, 2024
Python 7 3 Updated Jan 14, 2025

Python package for Nonparametric Empirical Bayes

Python 7 Updated Sep 13, 2023

Companion webpage for the book "Bayesian Optimization" by Roman Garnett

HTML 896 46 Updated May 15, 2024

a MATLAB software package for computing the Nonparametric Maximum Likelihood Estimator (NPMLE) in mixture models, based on the augmented Lagrangian method and the partial expectation maximation app…

MATLAB 7 Updated Aug 5, 2022
Jupyter Notebook 2 Updated Nov 4, 2024

Optimization algorithms for computing maximum-likelihood estimates of mixture proportions.

Julia 7 1 Updated Nov 23, 2019

R package for fast maximum-likelihood estimation of mixture proportions using SQP.

R 11 7 Updated Dec 21, 2023

List of ML conferences with important dates and accepted paper list

CSS 78 8 Updated Jan 6, 2025

Code repository for the paper 'Emergence of the SVD as an interpretable factorization in deep learning for inverse problems'

Jupyter Notebook 1 Updated Sep 13, 2024

Library implementing the Likelihood-based Reweighting of Structures for Cryo-EM Images

Jupyter Notebook 1 Updated Dec 9, 2024

[WIP] PyTorch & Hydra Template

Python 11 2 Updated Jul 13, 2022

A Python-based toolbox of various methods in decision making, uncertainty quantification and statistical emulation: multi-fidelity, experimental design, Bayesian optimisation, Bayesian quadrature, …

Python 615 128 Updated Sep 25, 2024

Flexible Python configuration system. The last one you will ever need.

Python 2,036 121 Updated Jan 19, 2025

The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

Jupyter Notebook 6 Updated Jan 26, 2025

Orderly computational experiments in Python. A place for everything and everything in its place

Jupyter Notebook 2 Updated Jul 2, 2024
Jupyter Notebook 5 Updated Jan 24, 2025

CryoET Data Portal

TypeScript 21 11 Updated Feb 1, 2025

Gym of Examples for Profiling Heterogeneity Methods in Cryo-EM

Python 2 2 Updated Aug 5, 2024

An API standard for single-agent reinforcement learning environments, with popular reference environments and related utilities (formerly Gym)

Python 8,027 903 Updated Jan 30, 2025

macromolecular crystallography library and utilities

C++ 240 47 Updated Jan 31, 2025

JAX - A curated list of resources https://github.com/google/jax

1,679 134 Updated Jul 10, 2024

Code for Gaussian Score Matching Variational Inference

Python 30 4 Updated Oct 10, 2024

A workflow for reproducible and open scientific articles

TeX 577 48 Updated Jan 30, 2025

Simulation-based inference in JAX

Python 29 4 Updated Jan 19, 2025

A Python library for amortized Bayesian workflows using generative neural networks.

Python 412 59 Updated Jan 29, 2025

A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portal

Python 9 2 Updated Nov 22, 2024

A curated list of awesome computational cryo-ET methods.

43 2 Updated Oct 16, 2024
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