Step 1:
./001-get-sizes

Step 2:
./002-split-cluster-ids-qsub

Step 3:
./004-qsub-many | qsub-many

Step 4:
Run ./005-check
no output  means cluster 1 is good

Step 5 (the manual step):
Create a folder ./fasta_sources/ with several fasta files
One fasta per one column in the spreadsheet

mkdir fasta_sources

For example:
  mv All_* fasta_sources/

Step 6:
  ./006-make-ids-from-fasta

Step 7:
  qsub -d `pwd` ./007-species-of-clusters