The complete sequence of a human genome

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

A full-featured & carefully designed adaptive prompt for Bash & Zsh

A beautiful and useful low-latency prompt for your shell, written in go

A C++ drop-in replacement of FastQC to assess the quality of sequence read data

Molecular Diagnosis (MD) of Acute Lymphoblastic Leukemia (ALL): An integrative ALL classification system based on RNA-seq.

An open-source software to help in designing NGS panels

Fast, efficient RNA-Seq metrics for quality control and process optimization

AmpliCI, a model-based algorithm for denoising Illumina amplicon data.

Deep functional residue identification

Genome browser and variant annotation

Tiberius is a deep learning gene finder.

Reorients assembled microbial sequences

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

PSAURON is a machine learning model for rapid assessment of protein coding gene annotation

Python library to handle Gene Ontology (GO) terms

A quality control analysis tool for high throughput sequencing data

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

De novo assembly from Oxford Nanopore reads.

Tool for globally phasing diploid assembly graphs with orthogonal data

Detecting multi-genome synteny using minimizer graph mapping

A grammar of graphics for comparative genomics

Identify and find telomeres, or telomeric repeats in a genome.

Generate an interactive dot plot from mummer or minimap alignments

Creating a simple Docker image to help perform comparisons for FASTQ compression

FASTQ compression