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Successful Job Applications and Grants

731 130 Updated Jan 2, 2025

ATProto Feed Generator Starter Kit

TypeScript 1,728 615 Updated Feb 1, 2025

Next-generation PRALINE sequence alignment program.

Python 9 Updated Mar 31, 2019

List of software packages for multi-omics analysis

757 168 Updated Apr 23, 2024

A novel tool for linking peptide with taxonomic and functional information with OTF in Metaproteomics.

Python 2 1 Updated Feb 6, 2025

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

R 139 28 Updated Feb 11, 2025

Fast and accurate label-free quantification for small and very large numbers of proteomes

Jupyter Notebook 44 5 Updated Feb 12, 2025

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

Python 83 27 Updated Dec 17, 2024

Interfaces for HDF5-based Single Cell File Formats

R 155 49 Updated Nov 4, 2023

Proteomics Toolset for Integrative Data Analysis

R 22 14 Updated Aug 10, 2023

Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.

Jupyter Notebook 22 4 Updated Apr 5, 2017

Fast genome-wide functional annotation through orthology assignment

Python 589 106 Updated May 13, 2024

Understanding Deep Learning - Simon J.D. Prince

Jupyter Notebook 7,001 1,471 Updated Feb 11, 2025

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

HTML 53 8 Updated Feb 15, 2021

Tools and methods for analysis of single cell assay data in R

R 230 57 Updated Sep 27, 2023

Toolkit for processing sequences in FASTA/Q formats

C 1,426 308 Updated Aug 10, 2024

Master the fundamentals of machine learning, deep learning, and mathematical optimization by building key concepts and models from scratch using Python.

Python 1,747 618 Updated Jan 30, 2025

🧬 gget enables efficient querying of genomic reference databases

Python 988 76 Updated Feb 12, 2025

RNA-seq aligner

C 1,919 513 Updated Jun 28, 2024