Extracts and analyses topological skeletons as undirected graphs. For usage instructions and API reference, please refer to the documentation:
The functionality of the plugin comprises the following:
- Extracting the topological skeleton of a binary image using the medial axis transform.
- Extracting the netowrk of the skeleton as an undirected
networkxgraph. - Computing features of individual skeleton components as well as the entire skeleton network.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
You can install napari-toska via pip:
pip install napari-toska
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-toska" is free and open source software
If you encounter any problems, please [file an issue] along with a detailed description.