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Issues list

ValueError: Could Not Determine Alphabet of File When Using digital=True in esl.SequenceFile question Further information is requested
#80 by BioGavin was closed Oct 27, 2024
2
Provide the description of an HMM enhancement New feature or request
#76 by oschwengers was closed Oct 8, 2024
1
13
"Erroneous" type warning? bug Something isn't working
#72 by leoburgy was closed Jul 30, 2024
3
Uninformative error when input hmm file contains profiles with different alphabets bug Something isn't working
#70 by Sann5 was closed Jun 19, 2024
2
[Bug] Pickling and unpickling an HMM object changes the cutoff values bug Something isn't working
#67 by jolespin was closed Apr 25, 2024
5
[Question] What does does included and reported mean in pyhmmer.plan7.Hit? question Further information is requested
#66 by jolespin was closed Apr 24, 2024
2
pyhmmer.hmmer.hmmsearch is always slower than using hmmsearch directly bug Something isn't working question Further information is requested
#63 by Gmar999 was closed Mar 28, 2024
6
pyhmmer.nhmmer throws error when the number of FASTA seqs is larger than 64 bug Something isn't working
#62 by moshi4 was closed Mar 12, 2024
2
HMMSearch block and freeze bug Something isn't working
#61 by jpjarnoux was closed Mar 5, 2024
5
Hmmsearch callback tqdm update bug Something isn't working
#60 by jpjarnoux was closed Mar 4, 2024
4
Save the DigitalSequenceBlock as pickle question Further information is requested
#56 by chtsai0105 was closed Nov 4, 2023
6
Scoring a set of sequences with HMM question Further information is requested
#55 by paoslaos was closed Oct 31, 2023
3
hmmscan gets confused about short monotone sequences' alphabet. ( assumes Amino, actually RNA) question Further information is requested
#53 by rtviii was closed Oct 7, 2023
7
Batch the hmmsearch output question Further information is requested
#51 by chtsai0105 was closed Sep 9, 2023
5
Aborted (core dumped) occurred while doing translate bug Something isn't working
#50 by chtsai0105 was closed Aug 21, 2023
3
Best way to Read in/Search Over Many Many HMMs? duplicate This issue or pull request already exists question Further information is requested
#49 by gbouras13 was closed Aug 11, 2023
3
Load more than 1024 HMM files question Further information is requested
#48 by chtsai0105 was closed Jul 25, 2023
2
Reported/Included domain counts are doubled after TopHits merge bug Something isn't working
#46 by zdk123 was closed Aug 2, 2023
2
PyHmmer installation error question Further information is requested
#44 by RSweeney25 was closed Jun 8, 2023
1
incE not being respected question Further information is requested
#43 by EvanKomp was closed Jun 5, 2023
2
Error while running nhmmer bug Something isn't working
#42 by theabhirath was closed Jun 7, 2023
3
CPUs not being utilized bug Something isn't working
#41 by EvanKomp was closed Jun 2, 2023
8
PyHMMER 0.8.0 TMD should be 0 for last node question Further information is requested
#40 by jamaliki was closed May 19, 2023
5
Generating sequences enhancement New feature or request
#39 by mireklzicar was closed May 21, 2023
1
Conflict with numba building Related to building the package
#38 by seanrjohnson was closed Jun 6, 2024
3
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