Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA-seq analysis pipeline for detection of gene-fusions

Call and score variants from WGS/WES of rare disease patients.

Nanopore demultiplexing, QC and alignment pipeline

Precision HLA typing from next-generation sequencing data

ChIP-seq peak-calling, QC and differential analysis pipeline.

Converts bam or cram files to fastq format and does quality control.

ATAC-seq peak-calling and QC analysis pipeline

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection