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dna-alignment-pipeline
dna-alignment-pipeline PublicDNA alignment pipeline tailored to IGMM compute cluster
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base-space-download-fastq-with-checksums
base-space-download-fastq-with-checksums PublicDownload FASTQ files from Illumina BaseSpace via the CLI with checksums
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rnaseq
rnaseq PublicForked from nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
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nanoseq
nanoseq PublicForked from nf-core/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
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somalier
somalier PublicForked from brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs
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merge_fastq
merge_fastq PublicForked from lconde-ucl/merge_fastq
Nextflow pipeline to merge FastQ files from different lanes
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