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Commits on Oct 6, 2016

• Restore original copyright clause and prevent it from being changed.

  brianwalenz

  committed
  73ada59

Commits on Nov 19, 2015

• Update copyrights. Most changes are just adding stop dates to the BNBI supported work. Thanks, guys!

  brianwalenz

  committed
  72c27c9

Commits on Oct 21, 2015

• Remove useless Makefile symlinks.

  brianwalenz

  committed
  5d2173a

Commits on Aug 20, 2015

• Add copyright notice. Every. File.

  brianwalenz

  committed
  6950cb7

Commits on Aug 10, 2015

• Obsolete.

  brianwalenz

  committed
  361bcd3

Commits on Dec 9, 2014

• Integrate kmer/leaff and kmer/meryl (and ALL the necessary library functions) into src.

  brianwalenz

  committed
  472122f

Commits on Dec 6, 2014

• Meryl kind-of imported from kmer, except it doesn't know seqStream and merStream.

  brianwalenz

  committed
  0f1691e

• Move speedCounter to AS_UTL.

  brianwalenz

  committed
  2c96377

• Move bitOperations from kmer to ca3g.

  brianwalenz

  committed
  0d5ef06

Commits on Dec 5, 2014

• Move from kmer/libutil to src/AS_UTL.

  brianwalenz

  committed
  65c2a58

• Replace build system with 'boilermake', remove dead 'kazlib' and some other miscelany.

  brianwalenz

  committed
  22c2a1d

Commits on Oct 23, 2014

• Disable glibc parallel sorting; we aren't big enough to benefit.

  brianwalenz

  committed
  30c69f5

Commits on Oct 21, 2014

• Initialize intervalList (depth mode). Compiler warnings. Fix reallocation size error (also depth mode).

  brianwalenz

  committed
  b78e68e

Commits on Oct 14, 2014

• Add a 'value' to the interval list, and rename some of the methods.

  brianwalenz

  committed
  66b2633

Commits on Oct 7, 2014

• ...and fix the Makefile to remove the now deleted file.

  brianwalenz

  committed
  75174cd

• Template-ify the intervalList.

  brianwalenz

  committed
  f1629f6

Commits on Aug 31, 2014

• Fix invert() to handle cases with one interval.

  brianwalenz

  committed
  3590186

Commits on Aug 23, 2014

• Ignore a failed seek() on creation, for when the input is a pipe.

  brianwalenz

  committed
  37072ea

Commits on Apr 12, 2014

• Install renamed uint32List.H.

  brianwalenz

  committed
  c85d485

Commits on Apr 11, 2014

• Replace u32bit (etc) types with more standard uint32 (etc) types.

  brianwalenz

  committed
  b050064

Commits on Aug 28, 2013

• The intervalList to intervalDepth conversion was losing the last depth interval.

  brianwalenz

  committed
  bec8592

Commits on May 8, 2013

• Add 'minOverlap' definition from the last commit.

  brianwalenz

  committed
  139e404

Commits on May 3, 2013

• When merging, catch intervals that are contained.

  brianwalenz

  committed
  5268d95

Commits on Apr 29, 2013

• Restore intervalList functionality needed for atac to compile.

  brianwalenz

  committed
  dfed164

Commits on Apr 4, 2013

• Remove unused and incorrect algorithms.

  brianwalenz

  committed
  4f98e34

Commits on Mar 29, 2013

• Fix multiple invocations of va_list when printing to screen also.

  brianwalenz

  committed
  8e44991

Commits on Jan 3, 2013

• Don't let the queue size fall below the number of workers.

  brianwalenz

  committed
  cd98988

• Return true/false if tick() prints a message.

  brianwalenz

  committed
  3816638

Commits on Oct 15, 2012

• Fix compilation issues on Solaris.

  brianwalenz

  committed
  5c18895

Commits on Jul 18, 2012

• Add operator() to return the int of a word.

  brianwalenz

  committed
  e771f44

Commits on May 10, 2012

• Rename parameter to prevent shadowing member.

  brianwalenz

  committed
  d785640

Commits on May 8, 2012

• Allow changing the size of the 'resize' at construction time.

  brianwalenz

  committed
  743e1d7

Commits on Mar 1, 2012

• Allow tick() of any size.

  brianwalenz

  committed
  7f9addd

Commits on Feb 28, 2012

• Clear the buffer on creation; valgrind.

  brianwalenz

  committed
  492f827

Commits on Jan 19, 2012

• Don't define __STDC_*_MACROS if already defined.

  brianwalenz

  committed
  fa182e0

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