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Add link to intermediate files
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gonzalobenegas committed Apr 28, 2023
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Expand Up @@ -13,6 +13,7 @@ model = AutoModelForMaskedLM.from_pretrained("songlab/gpn-brassicales")
* [GPN logo track at UCSC Genome Browser](https://genome.ucsc.edu/s/gbenegas/gpn-arabidopsis)
* [Promoter motifs obtained with GPN + TF-MoDISco](promoter_motifs_gpn_modisco.pdf)
* [Training dataset on Hugging Face Hub](https://huggingface.co/datasets/songlab/genomes-brassicales-balanced-v1)
* [Intermediate files necessary for running notebooks, such as embeddings and variant scores](https://huggingface.co/datasets/gonzalobenegas/processed-data-arabidopsis/tree/main)

## Reproducing the analysis
General dependencies:
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