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qp-knight-lab-processing Public
Forked from qiita-spots/qp-knight-lab-processingPython BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2024 -
qiita Public
Forked from qiita-spots/qiitaQiita - A QIIME databasing effort
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2024 -
mg-scripts Public
Forked from biocore/mg-scriptsKnight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2024 -
metagenomics_pooling_notebook Public
Forked from biocore/metagenomics_pooling_notebookJupyter notebooks to assist with sample processing
Python MIT License UpdatedNov 20, 2024 -
qp-woltka Public
Forked from qiita-spots/qp-woltkaPython BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2024 -
qp-meta Public
Forked from qiita-spots/qp-metaQiita Woltka processing plugin with fast bowtie2 implemenetation
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 10, 2024 -
qiita_client Public
Forked from qiita-spots/qiita_clientA python library that simplifies the communication between the plugins and Qiita's REST api
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 8, 2024 -
qtp-biom Public
Forked from qiita-spots/qtp-biomPython BSD 3-Clause "New" or "Revised" License UpdatedAug 12, 2024 -
qp-spades Public
Forked from qiita-spots/qp-spadesQiita plugin to process metagenomic assemblies and isolates
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 6, 2024 -
qp-fastp-minimap2 Public
Forked from qiita-spots/qp-fastp-minimap2Fast QC and host filtering for Whole Genome Sequencing and Metatranscriptomic sequencing
Python BSD 2-Clause "Simplified" License UpdatedFeb 6, 2024 -
qp-qiime2 Public
Forked from qiita-spots/qp-qiime2Qiime 2 plugin for Qiita
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 29, 2023 -
scikit-bio Public
Forked from scikit-bio/scikit-bioCore objects, functions and statistics for working with biological data in Python.
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 7, 2023 -
qtp-sequencing Public
Forked from qiita-spots/qtp-sequencingPython BSD 3-Clause "New" or "Revised" License UpdatedAug 4, 2023 -
qtp-diversity Public
Forked from qiita-spots/qtp-diversityQiita Type Plugin for diversity types
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 24, 2023 -
qtp-job-output-folder Public
Forked from qiita-spots/qtp-job-output-folderPython BSD 3-Clause "New" or "Revised" License UpdatedFeb 28, 2023 -
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qp-target-gene Public
Forked from qiita-spots/qp-target-genePython BSD 3-Clause "New" or "Revised" License UpdatedFeb 10, 2023 -
qtp-visualization Public
Forked from qiita-spots/qtp-visualizationQiita type plugin for visualization artifacts
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 6, 2022 -
deblur Public
Forked from biocore/deblurDeblur is a greedy deconvolution algorithm based on known read error profiles.
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 3, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJun 2, 2022 -
q2-katharoseq Public
Forked from biocore/q2-katharoseqPython BSD 3-Clause "New" or "Revised" License UpdatedMay 18, 2022 -
qiita-files Public
Forked from qiita-spots/qiita-filesFile formats defined for Qiita and Qiita plugins internal use
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 16, 2022 -
version-testing-fastp-minimap2 Public
Forked from knightlab-analyses/version-testing-fastp-minimap2version-testing for fastp-minimap2
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redbiom Public
Forked from biocore/redbiomSample search by metadata and features
Python Other UpdatedApr 8, 2022 -
qebil Public
Forked from ucsd-cmi/qebilPython BSD 3-Clause "New" or "Revised" License UpdatedApr 6, 2022 -
bloom-analyses Public
Forked from knightlab-analyses/bloom-analysesJupyter Notebook UpdatedNov 16, 2021 -
q2-feature-table Public
Forked from qiime2/q2-feature-tableQIIME 2 plugin supporting operations on feature tables.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 24, 2021 -
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q2-coordinates Public
Forked from bokulich-lab/q2-coordinatesmethods for geographic mapping of qiime2 artifact data or metadata
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 18, 2020