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Commits on Jun 27, 2022

• Use native SSE2 intrinsics on i386 as well as x86-64

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Commits on Jun 26, 2022

• On other platforms, emulate SSE2 SIMD calls using scalar code

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Commits on Jun 20, 2022

• On ARM, rewrite SSE2 SIMD calls using Neon intrinsics

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Commits on Jun 17, 2022

• Make _mm_load_si128() explicit

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Commits on Mar 7, 2022

• Use $CPPFLAGS and $LDFLAGS if they are set

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Commits on May 9, 2021

• Convert Travis CI to GitHub Actions

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Commits on Jul 3, 2017

• In bsw2_stat(), fail to infer when no pairs are within boundaries

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Commits on Jun 30, 2017

• Copy the whole kstring_t even if it contains NULs

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Commits on Jun 29, 2017

• Expand tot_seqs variable to long long

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Commits on Jun 27, 2017

• Add "bwa mem -o FILE" synonym and documentation

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Commits on Jun 26, 2017

• Prevent Clang warnings on abs() and fabs() calls

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Commits on May 10, 2017

• Only realloc(pac,...) if it needs to be made larger

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Commits on Apr 25, 2017

• Add missing <stdint.h> include

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• Replace u_int32_t by the more common uint32_t

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Commits on Jun 14, 2013

• Reformat note for 80 columns, and fix typo

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• Complain when bwa mem is given too many filenames

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• Check that paired reads have the same QNAME

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