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1. SpectralInference.jl SpectralInference.jl Public

   Spectral [phenotype/phylogenetic] Inference package

   Julia 1 1

2. spipy spipy Public

   Python tools for spectral inference

   Python

3. Doran_etal_2023 Doran_etal_2023 Public

   Curated code repository, reproducing analyses from "Subspecies phylogeny in the human gut revealed by coevolutionary constraints across the bacterial kingdom"

   Jupyter Notebook