arogozhnikov

Alex Rogozhnikov arogozhnikov

ML + Science, einops, scientific tools, protein design

1.8k followers · 33 following

Achievements

x2 x2 x4 x3

Achievements

x2 x2 x4 x3

Highlights

einops Public

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

deep-learning chainer tensorflow numpy keras pytorch tensor

Python 8,604 354 MIT License 1 issue needs help Updated Dec 21, 2024
arogozhnikov.github.io Public

'Brilliantly wrong' blog, Machine Learning visualizations live here

blog science machine-learning programming math physics

HTML 131 52 Updated Dec 16, 2024
r2_fsspec Public

Support of r2 storage in fsspec as r2://

Python MIT License Updated Nov 27, 2024
hep_ml Public

Machine Learning for High Energy Physics.

python machine-learning scikit-learn neural-networks high-energy-physics boosting-algorithms splot

Jupyter Notebook 180 64 Other Updated Oct 16, 2024
s3fs Public
Forked from fsspec/s3fs

S3 Filesystem

Python 1 BSD 3-Clause "New" or "Revised" License Updated Sep 29, 2024
arogozhnikov Public

1 Updated Sep 19, 2024
demuxalot Public

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

scrnaseq demultiplexing biotech single-cell-analysis

Python 24 3 MIT License Updated Aug 17, 2024
micro-openfold Public
Forked from aqlaboratory/openfold

update openfold code to make it pip-installable in 2024. Skips compiling binaries

Python 1 1 Apache License 2.0 Updated Jul 9, 2024
adamw_bfloat16 Public

AdamW optimizer for bfloat16 models in pytorch 🔥.

Python 30 4 MIT License Updated Jun 16, 2024
microDockQ Public

minified, pip-installable version of DockQ metric

Python 1 GNU General Public License v3.0 Updated Apr 15, 2024
microANARCI Public

Minified version of ANARCI, pip-installable

Python 1 BSD 3-Clause "New" or "Revised" License Updated Mar 13, 2024
sloths Public

when pandas is too much hassle

1 Updated Jan 11, 2024
tcr-matching Public

Learning T-cell immunity *without* knowing peptides

Jupyter Notebook 2 MIT License Updated Nov 5, 2023
tooltool Public

Personal tools used in various places

Python 1 Updated Oct 1, 2023
eindex Public

Multidimensional indexing for tensors

Jupyter Notebook 115 3 Updated Jul 17, 2023
cupy Public
Forked from cupy/cupy

NumPy & SciPy for GPU

Python 1 MIT License Updated Apr 4, 2023
numpy Public
Forked from numpy/numpy

Numpy main repository

C 1 1 Other Updated Feb 26, 2023
3d_nn Public

Raymarching neural network in browsers with WebGL shaders

visualization webgl neural-network shaders raymarching-distance-fields

JavaScript 195 32 Updated Dec 5, 2022
streamlit-aggrid Public
Forked from PablocFonseca/streamlit-aggrid

Implementation of Ag-Grid component for Streamlit

Python 1 1 MIT License Updated Jul 14, 2022
cellxgene-gateway Public
Forked from Novartis/cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

Python 1 Apache License 2.0 Updated Mar 14, 2022
rtg_score Public

Rank-To-Group score evaluates contribution of confounding factors

Jupyter Notebook 21 1 MIT License Updated Nov 3, 2021
readable_capsnet Public

Blazingly fast capsule networks in 75 lines of pytorch+einops

Python 26 2 MIT License Updated Sep 23, 2021
mint Public
Forked from google-research/mint

Multi-modal Content Creation Model Training Infrastructure including the FACT model (AI Choreographer) implementation.

Python 1 Apache License 2.0 Updated Sep 5, 2021
mlp-mixer-pytorch Public
Forked from lucidrains/mlp-mixer-pytorch

An All-MLP solution for Vision, from Google AI

Python 1 MIT License Updated May 7, 2021
python3_with_pleasure Public

A short guide on features of Python 3 with examples

3,625 198 Updated May 3, 2021
pysam Public
Forked from pysam-developers/pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

C 1 MIT License Updated Jan 12, 2021
iview5d Public

Extremely simplistic viewer of small ndimensional patches for jupyter notebook. Powered by einops

Jupyter Notebook 3 MIT License Updated Oct 29, 2020
kronecker-attention-pytorch Public
Forked from lucidrains/kronecker-attention-pytorch

Implementation of Kronecker Attention in Pytorch

Python 1 1 MIT License Updated Aug 28, 2020
scanpy Public
Forked from scverse/scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

Python 1 BSD 3-Clause "New" or "Revised" License Updated Apr 17, 2020
demuxlet Public
Forked from statgen/demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

C++ 1 Apache License 2.0 Updated Oct 19, 2019

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Alex Rogozhnikov arogozhnikov

Achievements

Achievements

Highlights

Block or report arogozhnikov

einops Public

arogozhnikov.github.io Public

r2_fsspec Public

hep_ml Public

s3fs Public

arogozhnikov Public

demuxalot Public

micro-openfold Public

adamw_bfloat16 Public

microDockQ Public

microANARCI Public

sloths Public

tcr-matching Public

tooltool Public

eindex Public

cupy Public

numpy Public

3d_nn Public

streamlit-aggrid Public

cellxgene-gateway Public

rtg_score Public

readable_capsnet Public

mint Public

mlp-mixer-pytorch Public

python3_with_pleasure Public

pysam Public

iview5d Public

kronecker-attention-pytorch Public

scanpy Public

demuxlet Public