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Commits on Feb 14, 2018

• swap MetaDE for metap, remove NMF dependency

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Commits on Jan 10, 2018

• add example code for RunMultiCCA

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Commits on Jan 9, 2018

• Merge branch 'develop' of github.com:satijalab/seurat-private into develop

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• update NEWS

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  7c3a8e7

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• cran requirements cleanup

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• Merge branch 'develop-private' into feat/multi-cca

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• Merge branch 'develop' into develop-private

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• update multi-cca internal functions with documentation

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Commits on Dec 15, 2017

• Merge branch 'develop' into feat/multi-cca

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Commits on Dec 7, 2017

• Merge pull request satijalab#237 from leonfodoulian/patch-1

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Commits on Nov 29, 2017

• Merge pull request satijalab#229 from rpeys/master

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Commits on Nov 28, 2017

• add verbose option for CalcVarExpRatio, add tests

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• update docs for AlignSubspace, add verbose option

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  6c5465d

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• move alignment related functions to separate file

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  5079e65

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• start adding tests for alignment

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• add in code for calculating alignment score

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  93af235

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• Merge branch 'develop' into feat/multi-cca

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  5bf8502

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• fix issue with VariableGenePlot satijalab#230

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Commits on Nov 27, 2017

• add do.clean and subset.raw parameters to SubsetData

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• add plot.title param to DimPlot

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Commits on Nov 26, 2017

• add option to DimPlot to allow user to change order in which points are plotted

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Commits on Nov 21, 2017

• change to average of first n genes for bicor plot

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  c6b668c

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• fix progress bar in EvaluateCCs

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  6d04da0

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• update docs

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  19d3a51

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• update MetaDE dependency handling

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Commits on Nov 20, 2017

• change axis label on MetgeneBicorPlot

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Commits on Nov 19, 2017

• remove unnecessary steps from RunMultiCCA

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Commits on Nov 18, 2017

• ensure only genes with non-zero variance in all datasets are used

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• store RunMultiCCA parameters

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  13a9144

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• re-remove NodeHeatmap for now

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  21989b3

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• better progress bar for MetageneBicorPlot

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  1fcf723

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• take abs of bicor for reference group

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  713ed5f

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• Merge branch 'feat/multi-cca' of github.com:satijalab/seurat-private into feat/multi-cca

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  e081362

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• add MetageneBicorPlot function for CC selection

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Commits on Nov 16, 2017

• update DESCRIPTION with MetaDE

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