Progam to detect SNV with the genome hg38

Precision HLA typing from next-generation sequencing data

Pipeline for RNA and DNA integrated analysis for somatic mutation detection

nf-core pipeline for comparative analysis of ortholog predictions

A single cell transcriptomics pipeline for QC, integration and making the data presentable

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Protein 3D structure prediction pipeline

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

gatk4 RNA variant calling pipeline

A nextflow variant benchmarking pipeline - premature

A single-cell RNAseq pipeline for 10X genomics data

A GitHub action to install Nextflow

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

Deep networks for protein functional inference

Mondo Disease Ontology

Repo for downloading and storing OMIM data