Update for the last copyright update.

Bump version to 1.9.

Bump version to 1.8.

Belatedly update the version number to 1.7.1.

Bump version to 1.7.

Bump version to 1.6.

Bump default version number to 1.5.

Only set the error rate based on read type if it hasn't been set via …

…the command line.

Reserve memory for the error profiles.

Merge pull request marbl#83 from jxtx/clang-unused

Supress unused variable warnings for clang.